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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7465500   structural maintenance of chromosomes protein 6B 
 ppo-r.4   7465500   structural maintenance of chromosomes protein 6B 
 gma-u.5   100816916   structural maintenance of chromosomes protein 6B 
 gma-u.5   100811664   structural maintenance of chromosomes protein 6A 
 mtr-u.5   25491907   structural maintenance of chromosomes protein 6A 
 mtr-u.5   11412113   structural maintenance of chromosomes protein 6A 
 ath-u.5   SMC6A   structural maintenance of chromosomes 6A 
 ath-u.5   MIM   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 vvi-u.5   100249449   structural maintenance of chromosomes protein 6B 
 sly-u.5   101253591   structural maintenance of chromosomes protein 6B 
 osa-u.5   9267891   structural maintenance of chromosomes protein 6B 
 zma-u.5   100383441   Structural maintenance of chromosomes protein 6B 

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Top 50 coexpressed genes to 7465500 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7465500 (ppo-u.5 coexpression data)

CoexMap"7465500"


ppoLOC7465500 | Entrez gene ID : 7465500    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 2 2 2 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000724 [list] [network] double-strand break repair via homologous recombination  (74 genes)  IEA  
GO:0051276 [list] [network] chromosome organization  (156 genes)  IEA  
GO CC
GO:0030915 [list] [network] Smc5-Smc6 complex  (9 genes)  IEA  
GO:0035861 [list] [network] site of double-strand break  (12 genes)  IEA  
GO:0005694 [list] [network] chromosome  (396 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (35 genes)  IEA  
GO:0003697 [list] [network] single-stranded DNA binding  (62 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_024453730.1 [sequence] [blastp]
XP_024453731.1 [sequence] [blastp]
XP_024453732.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_024453730.1)
cyto 9,  nucl 1  (predict for XP_024453731.1)
cyto 9  (predict for XP_024453732.1)
Subcellular
localization
TargetP
other 8  (predict for XP_024453730.1)
other 5  (predict for XP_024453731.1)
other 8  (predict for XP_024453732.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7465500

.
ppo-r.4
for
7465500

.
gma-u.5
for
100816916

.
gma-u.5
for
100811664

.
mtr-u.5
for
25491907

.
mtr-u.5
for
11412113

.
ath-u.5
for
SMC6A

.
ath-u.5
for
MIM

.
vvi-u.5
for
100249449

.
sly-u.5
for
101253591

.
osa-u.5
for
9267891

.
zma-u.5
for
100383441

.


Ortholog ID: 6958
Species ath ath gma gma sly osa zma bra vvi ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol MIM SMC6A LOC100816916 LOC100811664 LOC101253591 LOC9267891 LOC100383441 LOC103860596 LOC100249449 LOC7465500 LOC11412113 LOC25491907 LOC123120688 LOC123111497 LOC123399577 LOC107933515 LOC107955117 LOC106428085 LOC106442438 CHLRE_12g525050v5 LOC8062043 LOC102601629 LOC102612928 LOC100845329 LOC107774285 LOC107786915
Function* P-loop containing nucleoside triphosphate hydrolases superfamily protein structural maintenance of chromosomes 6A structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6A structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B Structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6A structural maintenance of chromosomes protein 6A structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B-like structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B uncharacterized protein structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B-like structural maintenance of chromosomes protein 6A structural maintenance of chromosomes protein 6B structural maintenance of chromosomes protein 6B
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 6
ath03440 Homologous recombination 5
ath03410 Base excision repair 5
ath03420 Nucleotide excision repair 4
ath03430 Mismatch repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 4
ath03440 Homologous recombination 2
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03030 DNA replication 3
sly03410 Base excision repair 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03082 ATP-dependent chromatin remodeling 3
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03440 Homologous recombination 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03430 Mismatch repair 3
bra03013 Nucleocytoplasmic transport 3
bra03440 Homologous recombination 2
bra03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 4
vvi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 3
mtr03030 DNA replication 3
mtr03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03022 Basal transcription factors 2
tae03250 Viral life cycle - HIV-1 2
tae03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03440 Homologous recombination 2
bdi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 4
nta03410 Base excision repair 4
nta03420 Nucleotide excision repair 4
nta03430 Mismatch repair 4
nta03013 Nucleocytoplasmic transport 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836267 830659 100816916 100811664 101253591 9267891 100383441 103860596 100249449 7465500 11412113 25491907 123120688 123111497 123399577 107933515 107955117 106428085 106442438 5722508 8062043 102601629 102612928 100845329 107774285 107786915
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