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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7465830   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 ppo-r.4   7465830   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 ppo-m.4   7465830   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 ppo-u.5   7478085   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 gma-u.5   100787499   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 gma-u.5   100781643   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 mtr-u.5   25493641   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 ath-u.5   NRS/ER   nucleotide-rhamnose synthase/epimerase-reductase 
 vvi-u.5   100254814   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 sly-u.5   101249670   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 osa-u.5   9267465   bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 
 zma-u.5   100286359   uncharacterized LOC100286359 

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Top 50 coexpressed genes to 7465830 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7465830 (ppo-u.5 coexpression data)

CoexMap"7465830"


ppoLOC7465830 | Entrez gene ID : 7465830    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00541 [list] [network] Biosynthesis of various nucleotide sugars (37 genes)
pop01250 [list] [network] Biosynthesis of nucleotide sugars (115 genes)
GO BP
GO:0006556 [list] [network] S-adenosylmethionine biosynthetic process  (8 genes)  IEA  
GO CC
GO:0048269 [list] [network] methionine adenosyltransferase complex  (2 genes)  IEA  
GO MF
GO:0048270 [list] [network] methionine adenosyltransferase regulator activity  (2 genes)  IEA  
Protein XP_002303557.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 2,  chlo 1,  golg 1  (predict for XP_002303557.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002303557.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7465830

.
ppo-r.4
for
7465830

.
ppo-m.4
for
7465830

.
ppo-u.5
for
7478085

.
gma-u.5
for
100787499

.
gma-u.5
for
100781643

.
mtr-u.5
for
25493641

.
ath-u.5
for
NRS/ER

.
vvi-u.5
for
100254814

.
sly-u.5
for
101249670

.
osa-u.5
for
9267465

.
zma-u.5
for
100286359

.


Ortholog ID: 8288
Species ath gma gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol NRS/ER LOC100787499 LOC100781643 LOC101249670 LOC9267465 LOC100286359 LOC103838351 LOC103871990 LOC100254814 LOC7478085 LOC7465830 LOC25493641 LOC123137628 LOC123145096 LOC123401967 LOC107963680 LOC107929277 LOC106445572 LOC106430227 CHLRE_09g387171v5 LOC8073218 LOC102601196 LOC102628237 LOC100845999 LOC107780668 LOC107759475
Function* nucleotide-rhamnose synthase/epimerase-reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase uncharacterized LOC100286359 bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase-like bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase 3,5-epimerase/4-reductase;uncharacterized protein bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01250 Biosynthesis of nucleotide sugars 5
ath00520 Amino sugar and nucleotide sugar metabolism 4
ath00541 Biosynthesis of various nucleotide sugars 4
ath01240 Biosynthesis of cofactors 3
ath00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01250 Biosynthesis of nucleotide sugars 5
gma00520 Amino sugar and nucleotide sugar metabolism 4
gma00541 Biosynthesis of various nucleotide sugars 3
gma01240 Biosynthesis of cofactors 3
gma00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00670 One carbon pool by folate 4
gma01230 Biosynthesis of amino acids 4
gma01200 Carbon metabolism 3
gma00270 Cysteine and methionine metabolism 3
gma00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 4
sly01230 Biosynthesis of amino acids 3
sly01250 Biosynthesis of nucleotide sugars 2
sly04144 Endocytosis 2
sly01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01250 Biosynthesis of nucleotide sugars 5
osa00520 Amino sugar and nucleotide sugar metabolism 4
osa04814 Motor proteins 2
osa04144 Endocytosis 2
osa00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01250 Biosynthesis of nucleotide sugars 8
zma00520 Amino sugar and nucleotide sugar metabolism 7
zma00190 Oxidative phosphorylation 5
zma00020 Citrate cycle (TCA cycle) 4
zma00640 Propanoate metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00270 Cysteine and methionine metabolism 8
bra00670 One carbon pool by folate 8
bra01230 Biosynthesis of amino acids 6
bra01240 Biosynthesis of cofactors 6
bra01250 Biosynthesis of nucleotide sugars 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bra01230 Biosynthesis of amino acids 3
bra00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00670 One carbon pool by folate 3
vvi00100 Steroid biosynthesis 2
vvi00270 Cysteine and methionine metabolism 2
vvi01230 Biosynthesis of amino acids 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01250 Biosynthesis of nucleotide sugars 8
ppo00541 Biosynthesis of various nucleotide sugars 7
ppo00520 Amino sugar and nucleotide sugar metabolism 3
ppo01240 Biosynthesis of cofactors 3
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00670 One carbon pool by folate 3
ppo00270 Cysteine and methionine metabolism 3
ppo01250 Biosynthesis of nucleotide sugars 3
ppo01200 Carbon metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04814 Motor proteins 6
mtr01250 Biosynthesis of nucleotide sugars 4
mtr01240 Biosynthesis of cofactors 4
mtr00541 Biosynthesis of various nucleotide sugars 3
mtr00520 Amino sugar and nucleotide sugar metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 6
tae01250 Biosynthesis of nucleotide sugars 4
tae00541 Biosynthesis of various nucleotide sugars 3
tae04141 Protein processing in endoplasmic reticulum 3
tae00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 6
tae00190 Oxidative phosphorylation 4
tae04145 Phagosome 4
tae00541 Biosynthesis of various nucleotide sugars 3
tae01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01250 Biosynthesis of nucleotide sugars 4
hvu00520 Amino sugar and nucleotide sugar metabolism 3
hvu01240 Biosynthesis of cofactors 2
hvu00020 Citrate cycle (TCA cycle) 2
hvu04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 8
ghi01250 Biosynthesis of nucleotide sugars 3
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi03018 RNA degradation 2
ghi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04814 Motor proteins 7
ghi01250 Biosynthesis of nucleotide sugars 3
ghi04626 Plant-pathogen interaction 2
ghi00541 Biosynthesis of various nucleotide sugars 2
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00592 alpha-Linolenic acid metabolism 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 5
bna03040 Spliceosome 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00541 Biosynthesis of various nucleotide sugars 4
cre01250 Biosynthesis of nucleotide sugars 4
cre00514 Other types of O-glycan biosynthesis 3
cre00520 Amino sugar and nucleotide sugar metabolism 2
cre01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00190 Oxidative phosphorylation 10
sbi00020 Citrate cycle (TCA cycle) 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04145 Phagosome 5
sot04517 IgSF CAM signaling 5
sot04814 Motor proteins 4
sot00541 Biosynthesis of various nucleotide sugars 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04145 Phagosome 6
bdi04517 IgSF CAM signaling 5
bdi04814 Motor proteins 5
bdi00460 Cyanoamino acid metabolism 2
bdi00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 7
nta00541 Biosynthesis of various nucleotide sugars 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 7
nta00541 Biosynthesis of various nucleotide sugars 2
nta01250 Biosynthesis of nucleotide sugars 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842603 100787499 100781643 101249670 9267465 100286359 103838351 103871990 100254814 7478085 7465830 25493641 123137628 123145096 123401967 107963680 107929277 106445572 106430227 5720560 8073218 102601196 102628237 100845999 107780668 107759475
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