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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7468541   transcription initiation factor TFIID subunit 6 
 ppo-r.4   7468541   transcription initiation factor TFIID subunit 6 
 ppo-u.5   7487521   transcription initiation factor TFIID subunit 6 
 gma-u.5   100803416   transcription initiation factor TFIID subunit 6 
 gma-u.5   100799998   transcription initiation factor TFIID subunit 6 
 gma-u.5   100788777   transcription initiation factor TFIID subunit 6 
 mtr-u.5   11432982   transcription initiation factor TFIID subunit 6 
 mtr-u.5   11443540   transcription initiation factor TFIID subunit 6 
 ath-u.5   TAFII59   TATA BOX ASSOCIATED FACTOR II 59 
 ath-u.5   TAF6B   TBP-ASSOCIATED FACTOR 6B 
 vvi-u.5   100265835   transcription initiation factor TFIID subunit 6 
 vvi-u.5   100263756   transcription initiation factor TFIID subunit 6 
 sly-u.5   101253325   transcription initiation factor TFIID subunit 6 
 sly-u.5   101264035   transcription initiation factor TFIID subunit 6-like 
 osa-u.5   4324027   transcription initiation factor TFIID subunit 6 
 zma-u.5   100217288   uncharacterized LOC100217288 

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Top 50 coexpressed genes to 7468541 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7468541 (ppo-u.5 coexpression data)

CoexMap"7468541"


ppoLOC7468541 | Entrez gene ID : 7468541    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 3 2 2 2 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03022 [list] [network] Basal transcription factors (55 genes)
GO BP
GO:0051123 [list] [network] RNA polymerase II preinitiation complex assembly  (12 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (36 genes)  IEA  
GO CC
GO:0046695 [list] [network] SLIK (SAGA-like) complex  (5 genes)  IEA  
GO:0005669 [list] [network] transcription factor TFIID complex  (22 genes)  IEA  
GO:0000124 [list] [network] SAGA complex  (24 genes)  IEA  
GO MF
GO:0016251 [list] [network] RNA polymerase II general transcription initiation factor activity  (18 genes)  IEA  
GO:0003713 [list] [network] transcription coactivator activity  (49 genes)  IEA  
GO:0046982 [list] [network] protein heterodimerization activity  (111 genes)  IEA  
Protein XP_006375548.1 [sequence] [blastp]
XP_024441206.1 [sequence] [blastp]
Subcellular
localization
wolf
E.R. 2,  golg 2,  chlo 1,  nucl 1,  cyto 1,  cyto_nucl 1,  golg_plas 1,  E.R._vacu 1,  E.R._plas 1  (predict for XP_006375548.1)
golg 3,  E.R. 2,  chlo 1,  nucl 1,  E.R._vacu 1,  E.R._plas 1,  cyto_E.R. 1  (predict for XP_024441206.1)
Subcellular
localization
TargetP
other 5,  scret 4  (predict for XP_006375548.1)
other 5,  scret 4  (predict for XP_024441206.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7468541

.
ppo-r.4
for
7468541

.
ppo-u.5
for
7487521

.
gma-u.5
for
100803416

.
gma-u.5
for
100799998

.
gma-u.5
for
100788777

.
mtr-u.5
for
11432982

.
mtr-u.5
for
11443540

.
ath-u.5
for
TAFII59

.
ath-u.5
for
TAF6B

.
vvi-u.5
for
100265835

.
vvi-u.5
for
100263756

.
sly-u.5
for
101253325

.
sly-u.5
for
101264035

.
osa-u.5
for
4324027

.
zma-u.5
for
100217288

.


Ortholog ID: 4316
Species ath ath gma gma sly sly osa zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit cit bdi nta nta
Symbol TAF6B TAFII59 LOC100788777 LOC100783444 LOC101264035 LOC101253325 LOC4324027 LOC100217288 LOC103844197 LOC103836545 LOC100263756 LOC100265835 LOC7487521 LOC7468541 LOC11432982 LOC11443540 LOC123179778 LOC123102793 LOC123445732 LOC107932708 LOC107944495 LOC106400898 LOC111199881 CHLRE_07g349950v5 LOC8068710 LOC110431610 LOC102596874 LOC102598962 LOC102627223 LOC102607535 LOC100830054 LOC107824422 LOC107819860
Function* TBP-ASSOCIATED FACTOR 6B TATA BOX ASSOCIATED FACTOR II 59 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6-like transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 uncharacterized LOC100217288 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6-like uncharacterized protein transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6-like transcription initiation factor TFIID subunit 6-like transcription initiation factor TFIID subunit 6-like transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6 transcription initiation factor TFIID subunit 6
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 3
gma05100 Bacterial invasion of epithelial cells 3
gma04141 Protein processing in endoplasmic reticulum 3
gma03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 2
gma04016 MAPK signaling pathway - plant 2
gma03015 mRNA surveillance pathway 2
gma04382 Cornified envelope formation 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01240 Biosynthesis of cofactors 2
sly00020 Citrate cycle (TCA cycle) 2
sly00620 Pyruvate metabolism 2
sly00630 Glyoxylate and dicarboxylate metabolism 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03250 Viral life cycle - HIV-1 3
ppo03018 RNA degradation 3
ppo03420 Nucleotide excision repair 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00020 Citrate cycle (TCA cycle) 3
tae01200 Carbon metabolism 3
tae00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03022 Basal transcription factors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 3
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 3
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
sbi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit00900 Terpenoid backbone biosynthesis 2
cit03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04120 Ubiquitin mediated proteolysis 4
bdi04141 Protein processing in endoplasmic reticulum 3
bdi03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03022 Basal transcription factors 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841877 839370 100788777 100783444 101264035 101253325 4324027 100217288 103844197 103836545 100263756 100265835 7487521 7468541 11432982 11443540 123179778 123102793 123445732 107932708 107944495 106400898 111199881 5718057 8068710 110431610 102596874 102598962 102627223 102607535 100830054 107824422 107819860
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