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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7468604   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 ppo-r.4   7468604   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 ppo-m.4   7468604   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 gma-u.5   100798492   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 gma-u.5   100306428   pentatricopeptide repeat-containing protein 
 mtr-u.5   25492548   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 ath-u.5   AT3G46870   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103873288   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 vvi-u.5   100262150   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 vvi-u.5   100246751   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 ghi-r.1   107959151   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 ghi-r.1   107906585   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 bna-r.1   106352756   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 bna-r.1   106347557   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 cit-r.1   102616143   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 sly-u.5   101247961   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 sot-r.1   102602447   pentatricopeptide repeat-containing protein At3g46870 
 nta-r.1   107764222   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 nta-r.1   107764576   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 osa-u.5   4343537   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 zma-u.5   100276080   uncharacterized LOC100276080 
 tae-r.2   123052455   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 tae-r.2   123188339   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 tae-r.2   123044592   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 hvu-r.1   123429889   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 
 sbi-r.1   8084103   pentatricopeptide repeat-containing protein At3g46870 
 bdi-r.1   100826421   protein THYLAKOID ASSEMBLY 8-like, chloroplastic 

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Top 50 coexpressed genes to 7468604 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7468604 (ppo-u.5 coexpression data)

CoexMap"7468604"


ppoLOC7468604 | Entrez gene ID : 7468604    
Species ppo gma mtr ath bra vvi ghi bna cit sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 2 1 1 1 2 2 2 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002314145.3 [sequence] [blastp]
XP_024463866.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for XP_002314145.3)
chlo 9,  nucl 1,  mito 1  (predict for XP_024463866.1)
Subcellular
localization
TargetP
mito 2  (predict for XP_002314145.3)
mito 2  (predict for XP_024463866.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7468604
ppo-r.4
for
7468604
ppo-m.4
for
7468604
gma-u.5
for
100798492
gma-u.5
for
100306428
mtr-u.5
for
25492548
ath-u.5
for
AT3G46870
bra-r.6
for
103873288
vvi-u.5
for
100262150
vvi-u.5
for
100246751
ghi-r.1
for
107959151
ghi-r.1
for
107906585
bna-r.1
for
106352756
bna-r.1
for
106347557
cit-r.1
for
102616143
sly-u.5
for
101247961
sot-r.1
for
102602447
nta-r.1
for
107764222
nta-r.1
for
107764576
osa-u.5
for
4343537
zma-u.5
for
100276080
tae-r.2
for
123052455
tae-r.2
for
123188339
tae-r.2
for
123044592
hvu-r.1
for
123429889
sbi-r.1
for
8084103
bdi-r.1
for
100826421


Ortholog ID: 10131
Species ppo gma gma mtr ath bra vvi vvi ghi ghi bna bna cit sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol LOC7468604 LOC100798492 LOC100306428 LOC25492548 AT3G46870 LOC103873288 LOC100262150 LOC100246751 LOC107959151 LOC107906585 LOC106352756 LOC106347557 LOC102616143 LOC101247961 LOC102602447 LOC107764222 LOC107764576 LOC4343537 LOC100276080 LOC123052455 LOC123188339 LOC123044592 LOC123429889 LOC8084103 LOC100826421
Function* protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic pentatricopeptide repeat-containing protein protein THYLAKOID ASSEMBLY 8-like, chloroplastic Pentatricopeptide repeat (PPR) superfamily protein protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic pentatricopeptide repeat-containing protein At3g46870 protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic uncharacterized LOC100276080 protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic protein THYLAKOID ASSEMBLY 8-like, chloroplastic pentatricopeptide repeat-containing protein At3g46870 protein THYLAKOID ASSEMBLY 8-like, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi00561 Glycerolipid metabolism 2
ghi00566 Sulfoquinovose metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03083 Polycomb repressive complex 2
sly03018 RNA degradation 2
sly00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 3
osa03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 3
tae03010 Ribosome 3
tae00230 Purine metabolism 3
tae00250 Alanine, aspartate and glutamate metabolism 3
tae01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7468604 100798492 100306428 25492548 823840 103873288 100262150 100246751 107959151 107906585 106352756 106347557 102616143 101247961 102602447 107764222 107764576 4343537 100276080 123052455 123188339 123044592 123429889 8084103 100826421
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