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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7468631   DEAD-box ATP-dependent RNA helicase 15 
 ppo-r.4   7468631   DEAD-box ATP-dependent RNA helicase 15 
 ppo-m.4   7468631   DEAD-box ATP-dependent RNA helicase 15 
 ppo-u.5   7462984   DEAD-box ATP-dependent RNA helicase 15 
 gma-u.5   100799082   DEAD-box ATP-dependent RNA helicase 15 
 gma-u.5   100796232   DEAD-box ATP-dependent RNA helicase 15 
 gma-u.5   100785358   DEAD-box ATP-dependent RNA helicase 15 
 mtr-u.5   11424505   DEAD-box ATP-dependent RNA helicase 15 
 mtr-u.5   11431965   DEAD-box ATP-dependent RNA helicase 15 
 mtr-u.5   25491302   DEAD-box ATP-dependent RNA helicase 15 
 ath-u.5   UAP56a   DEAD/DEAH box RNA helicase family protein 
 ath-u.5   UAP56b   DEAD/DEAH box RNA helicase family protein 
 vvi-u.5   100250852   DEAD-box ATP-dependent RNA helicase 15 
 vvi-u.5   100268003   DEAD-box ATP-dependent RNA helicase 15 
 sly-u.5   101261336   DEAD-box ATP-dependent RNA helicase 15 
 sly-u.5   101259772   DEAD-box ATP-dependent RNA helicase 15 
 osa-u.5   AIP1   DEAD-box ATP-dependent RNA helicase 56-like 
 osa-u.5   AIP2   DEAD-box ATP-dependent RNA helicase 15-like 
 zma-u.5   100273717   uncharacterized LOC100273717 
 zma-u.5   100384654   uncharacterized LOC100384654 

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Top 50 coexpressed genes to 7468631 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7468631 (ppo-u.5 coexpression data)

CoexMap"7468631"


ppoLOC7468631 | Entrez gene ID : 7468631    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 3 2 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03013 [list] [network] Nucleocytoplasmic transport (142 genes)
pop03015 [list] [network] mRNA surveillance pathway (164 genes)
pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO CC
GO MF
GO:0003724 [list] [network] RNA helicase activity  (68 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002309623.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  cysk 1,  cysk_nucl 1  (predict for XP_002309623.1)
Subcellular
localization
TargetP
other 9  (predict for XP_002309623.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7468631

.
ppo-r.4
for
7468631

.
ppo-m.4
for
7468631

.
ppo-u.5
for
7462984

.
gma-u.5
for
100799082

.
gma-u.5
for
100796232

.
gma-u.5
for
100785358

.
mtr-u.5
for
11424505

.
mtr-u.5
for
11431965

.
mtr-u.5
for
25491302

.
ath-u.5
for
UAP56a

.
ath-u.5
for
UAP56b

.
vvi-u.5
for
100250852

.
vvi-u.5
for
100268003

.
sly-u.5
for
101261336

.
sly-u.5
for
101259772

.
osa-u.5
for
AIP1

.
osa-u.5
for
AIP2

.
zma-u.5
for
100273717

.
zma-u.5
for
100384654

.


Ortholog ID: 2045
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol UAP56a UAP56b LOC100796232 LOC100799082 LOC101261336 LOC101259772 AIP1 AIP2 LOC100273717 LOC100384654 LOC103850757 LOC103850759 LOC100268003 LOC100250852 LOC7462984 LOC7468631 LOC11431965 LOC25491302 LOC123061264 LOC123183423 LOC123443683 LOC107962898 LOC107888417 LOC106413081 LOC106366767 CHLRE_17g719000v5 LOC110433915 LOC110430204 LOC102589835 LOC102601130 LOC102618350 LOC100824690 LOC100826234 LOC107813637 LOC107759702
Function* DEAD/DEAH box RNA helicase family protein DEAD/DEAH box RNA helicase family protein DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 56-like DEAD-box ATP-dependent RNA helicase 15-like uncharacterized LOC100273717 uncharacterized LOC100384654 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15-like DEAD-box ATP-dependent RNA helicase 15 uncharacterized protein DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15-like DEAD-box ATP-dependent RNA helicase 56 DEAD-box ATP-dependent RNA helicase 56-like DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15 DEAD-box ATP-dependent RNA helicase 15
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03013 Nucleocytoplasmic transport 2
ath03015 mRNA surveillance pathway 2
ath03008 Ribosome biogenesis in eukaryotes 2
ath00240 Pyrimidine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 2
gma03015 mRNA surveillance pathway 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03013 Nucleocytoplasmic transport 3
sly03040 Spliceosome 3
sly03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 8
sly03015 mRNA surveillance pathway 6
sly03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 7
osa03015 mRNA surveillance pathway 5
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 6
osa03010 Ribosome 6
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 3
osa03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03010 Ribosome 2
zma03013 Nucleocytoplasmic transport 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
zma03015 mRNA surveillance pathway 5
zma03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03013 Nucleocytoplasmic transport 4
bra03015 mRNA surveillance pathway 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 4
bra03015 mRNA surveillance pathway 2
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi03040 Spliceosome 3
vvi03013 Nucleocytoplasmic transport 2
vvi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi01240 Biosynthesis of cofactors 2
vvi03015 mRNA surveillance pathway 2
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 5
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 3
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 9
mtr03015 mRNA surveillance pathway 4
mtr04382 Cornified envelope formation 2
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 3
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 7
tae03040 Spliceosome 7
tae03013 Nucleocytoplasmic transport 4
tae03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 2
tae03015 mRNA surveillance pathway 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 12
ghi03013 Nucleocytoplasmic transport 11
ghi03015 mRNA surveillance pathway 10
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03013 Nucleocytoplasmic transport 10
ghi03015 mRNA surveillance pathway 10
ghi03040 Spliceosome 10
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 9
bna03015 mRNA surveillance pathway 9
bna03040 Spliceosome 9
bna04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 9
bna03015 mRNA surveillance pathway 9
bna03040 Spliceosome 9
bna04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04141 Protein processing in endoplasmic reticulum 9
cre00510 N-Glycan biosynthesis 6
cre00513 Various types of N-glycan biosynthesis 5
cre03040 Spliceosome 3
cre03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
sbi03050 Proteasome 6
sbi03013 Nucleocytoplasmic transport 3
sbi03015 mRNA surveillance pathway 3
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 7
sbi03015 mRNA surveillance pathway 5
sbi03013 Nucleocytoplasmic transport 3
sbi04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot03015 mRNA surveillance pathway 6
sot03013 Nucleocytoplasmic transport 5
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 6
sot03013 Nucleocytoplasmic transport 6
sot03015 mRNA surveillance pathway 4
sot03060 Protein export 2
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 6
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 4
bdi03015 mRNA surveillance pathway 4
bdi03040 Spliceosome 4
bdi03010 Ribosome 3
bdi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 8
bdi03040 Spliceosome 4
bdi03013 Nucleocytoplasmic transport 4
bdi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta03015 mRNA surveillance pathway 6
nta03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta03015 mRNA surveillance pathway 7
nta03013 Nucleocytoplasmic transport 6
nta03008 Ribosome biogenesis in eukaryotes 2
nta03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830986 830990 100796232 100799082 101261336 101259772 4326192 4326193 100273717 100384654 103850757 103850759 100268003 100250852 7462984 7468631 11431965 25491302 123061264 123183423 123443683 107962898 107888417 106413081 106366767 5729315 110433915 110430204 102589835 102601130 102618350 100824690 100826234 107813637 107759702
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