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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7469068   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic 
 ppo-r.4   7469068   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic 
 ppo-m.4   7469068   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic 
 gma-u.5   100776666   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic 
 mtr-u.5   11407612   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic 
 ath-u.5   CCB4   cofactor assembly of complex C 
 vvi-u.5   100255235   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic 
 sly-u.5   101258059   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic 
 osa-u.5   4337227   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic 
 zma-u.5   109943949   protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic 

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Top 50 coexpressed genes to 7469068 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7469068 (ppo-u.5 coexpression data)

CoexMap"7469068"


ppoLOC7469068 | Entrez gene ID : 7469068    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010190 [list] [network] cytochrome b6f complex assembly  (3 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
Protein XP_052311106.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  nucl 1  (predict for XP_052311106.1)
Subcellular
localization
TargetP
other 7,  chlo 4  (predict for XP_052311106.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7469068

.
ppo-r.4
for
7469068

.
ppo-m.4
for
7469068

.
gma-u.5
for
100776666

.
mtr-u.5
for
11407612

.
ath-u.5
for
CCB4

.
vvi-u.5
for
100255235

.
sly-u.5
for
101258059

.
osa-u.5
for
4337227

.
zma-u.5
for
109943949

.


Ortholog ID: 9854
Species ath gma sly osa zma bra vvi ppo mtr hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol CCB4 LOC100776666 LOC101258059 LOC4337227 LOC109943949 LOC103829302 LOC100255235 LOC7469068 LOC11407612 LOC123428131 LOC107903687 LOC107886314 LOC106450245 LOC125575303 CHLRE_08g382300v5 LOC8079594 LOC102594748 LOC102610709 LOC100836599 LOC107778599 LOC107799032
Function* cofactor assembly of complex C protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic-like uncharacterized protein protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic-like protein COFACTOR ASSEMBLY OF COMPLEX C SUBUNIT B CCB4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00270 Cysteine and methionine metabolism 3
gma00620 Pyruvate metabolism 2
gma00740 Riboflavin metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 5
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly00260 Glycine, serine and threonine metabolism 3
sly00710 Carbon fixation by Calvin cycle 3
sly00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 4
cre00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00053 Ascorbate and aldarate metabolism 2
nta00480 Glutathione metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842278 100776666 101258059 4337227 109943949 103829302 100255235 7469068 11407612 123428131 107903687 107886314 106450245 125575303 5719843 8079594 102594748 102610709 100836599 107778599 107799032
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