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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7470676   25S rRNA (cytosine-C(5))-methyltransferase NSUN5 
 ppo-r.4   7470676   25S rRNA (cytosine-C(5))-methyltransferase NSUN5 
 ppo-m.4   7470676   25S rRNA (cytosine-C(5))-methyltransferase NSUN5 
 gma-u.5   100775620   25S rRNA (cytosine-C(5))-methyltransferase NSUN5 
 gma-u.5   100811850   25S rRNA (cytosine-C(5))-methyltransferase NSUN5 
 mtr-u.5   11431407   25S rRNA (cytosine-C(5))-methyltransferase NSUN5 
 ath-u.5   AT5G26180   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 vvi-u.5   100261190   25S rRNA (cytosine-C(5))-methyltransferase NSUN5 
 sly-u.5   101249566   25S rRNA (cytosine-C(5))-methyltransferase NSUN5 
 osa-u.5   4328735   25S rRNA (cytosine-C(5))-methyltransferase NSUN5 
 zma-u.5   100285125   NOL1R 

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Top 50 coexpressed genes to 7470676 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7470676 (ppo-u.5 coexpression data)

CoexMap"7470676"


ppoLOC7470676 | Entrez gene ID : 7470676    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0070475 [list] [network] rRNA base methylation  (22 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (220 genes)  IEA  
GO MF
GO:0008168 [list] [network] methyltransferase activity  (319 genes)  IEA  
Protein XP_002309481.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  mito 2,  chlo 1,  cysk 1  (predict for XP_002309481.2)
Subcellular
localization
TargetP
chlo 7,  other 4  (predict for XP_002309481.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7470676

.
ppo-r.4
for
7470676

.
ppo-m.4
for
7470676

.
gma-u.5
for
100775620

.
gma-u.5
for
100811850

.
mtr-u.5
for
11431407

.
ath-u.5
for
AT5G26180

.
vvi-u.5
for
100261190

.
sly-u.5
for
101249566

.
osa-u.5
for
4328735

.
zma-u.5
for
100285125

.


Ortholog ID: 8626
Species ath gma gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT5G26180 LOC100811850 LOC100775620 LOC101249566 LOC4328735 LOC100285125 LOC103854703 LOC103837110 LOC100261190 LOC7470676 LOC11431407 LOC123127302 LOC123144384 LOC123402516 LOC107958854 LOC107907034 LOC106382671 LOC106382673 LOC8082955 LOC102602613 LOC102607140 LOC100840930 LOC107802425 LOC107792248
Function* S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 NOL1R probable 28S rRNA (cytosine-C(5))-methyltransferase probable 28S rRNA (cytosine-C(5))-methyltransferase 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5-like 25S rRNA (cytosine-C(5))-methyltransferase NSUN5-like probable 28S rRNA (cytosine-C(5))-methyltransferase probable 28S rRNA (cytosine-C(5))-methyltransferase 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 probable 28S rRNA (cytosine-C(5))-methyltransferase 25S rRNA (cytosine-C(5))-methyltransferase NSUN5 25S rRNA (cytosine-C(5))-methyltransferase NSUN5-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 9
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
gma00010 Glycolysis / Gluconeogenesis 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
gma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 9
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00240 Pyrimidine metabolism 2
bra01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 4
ppo04144 Endocytosis 3
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 7
tae03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
tae03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03460 Fanconi anemia pathway 2
hvu03420 Nucleotide excision repair 2
hvu03040 Spliceosome 2
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00540 Lipopolysaccharide biosynthesis 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 6
sot00510 N-Glycan biosynthesis 5
sot00513 Various types of N-glycan biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 2
nta04141 Protein processing in endoplasmic reticulum 2
nta03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 2
nta03083 Polycomb repressive complex 2
nta04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 832687 100811850 100775620 101249566 4328735 100285125 103854703 103837110 100261190 7470676 11431407 123127302 123144384 123402516 107958854 107907034 106382671 106382673 8082955 102602613 102607140 100840930 107802425 107792248
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