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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7470701   glycine dehydrogenase (decarboxylating), mitochondrial 
 ppo-r.4   7470701   glycine dehydrogenase (decarboxylating), mitochondrial 
 ppo-m.4   7470701   glycine dehydrogenase (decarboxylating), mitochondrial 
 gma-u.5   100795673   glycine dehydrogenase (decarboxylating), mitochondrial 
 gma-u.5   100814366   glycine dehydrogenase (decarboxylating), mitochondrial 
 gma-u.5   100819714   glycine dehydrogenase (decarboxylating), mitochondrial 
 mtr-u.5   11415278   glycine dehydrogenase (decarboxylating), mitochondrial 
 ath-u.5   GLDP2   glycine decarboxylase P-protein 2 
 ath-u.5   GLDP1   glycine decarboxylase P-protein 1 
 vvi-u.5   100266280   glycine dehydrogenase (decarboxylating), mitochondrial 
 vvi-u.5   100266170   glycine dehydrogenase (decarboxylating), mitochondrial 
 sly-u.5   101260070   glycine dehydrogenase (decarboxylating), mitochondrial 
 osa-u.5   4341516   glycine dehydrogenase (decarboxylating), mitochondrial 
 osa-u.5   4325932   glycine dehydrogenase (decarboxylating), mitochondrial 
 zma-u.5   541946   glycine dehydrogenase (decarboxylating), mitochondrial 

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Top 50 coexpressed genes to 7470701 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7470701 (ppo-u.5 coexpression data)

CoexMap"7470701"


ppoLOC7470701 | Entrez gene ID : 7470701    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 3 3 1 2 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00260 [list] [network] Glycine, serine and threonine metabolism (86 genes)
pop00630 [list] [network] Glyoxylate and dicarboxylate metabolism (100 genes)
pop00670 [list] [network] One carbon pool by folate (51 genes)
pop00785 [list] [network] Lipoic acid metabolism (41 genes)
pop01200 [list] [network] Carbon metabolism (347 genes)
GO BP
GO:0019464 [list] [network] glycine decarboxylation via glycine cleavage system  (7 genes)  IEA  
GO CC
GO:0005960 [list] [network] glycine cleavage complex  (5 genes)  IEA  
GO:0048046 [list] [network] apoplast  (92 genes)  IEA  
GO:0009941 [list] [network] chloroplast envelope  (125 genes)  IEA  
GO:0005739 [list] [network] mitochondrion  (675 genes)  IEA  
GO MF
GO:0004375 [list] [network] glycine dehydrogenase (decarboxylating) activity  (1 genes)  IEA  
GO:0016594 [list] [network] glycine binding  (1 genes)  IEA  
GO:0030170 [list] [network] pyridoxal phosphate binding  (105 genes)  IEA  
Protein XP_002308562.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 9,  chlo_mito 5  (predict for XP_002308562.1)
Subcellular
localization
TargetP
mito 6,  chlo 4  (predict for XP_002308562.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7470701

.
ppo-r.4
for
7470701

.
ppo-m.4
for
7470701

.
gma-u.5
for
100795673

.
gma-u.5
for
100814366

.
gma-u.5
for
100819714

.
mtr-u.5
for
11415278

.
ath-u.5
for
GLDP2

.
ath-u.5
for
GLDP1

.
vvi-u.5
for
100266280

.
vvi-u.5
for
100266170

.
sly-u.5
for
101260070

.
osa-u.5
for
4341516

.
osa-u.5
for
4325932

.
zma-u.5
for
541946

.


Ortholog ID: 6502
Species ath ath gma gma sly osa osa zma bra vvi vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol GLDP2 GLDP1 LOC100819714 LOC100795673 LOC101260070 LOC4341516 LOC4325932 LOC541946 LOC103850153 LOC100266280 LOC100266170 LOC7470701 LOC11415278 LOC123070375 LOC123078832 LOC123444252 LOC107958881 LOC107907004 LOC125609071 LOC106364306 CHLRE_12g534800v5 LOC8066987 LOC102601213 LOC102627653 LOC100845191 LOC107783010 LOC107781010
Function* glycine decarboxylase P-protein 2 glycine decarboxylase P-protein 1 glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial-like glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating) 1, mitochondrial-like glycine dehydrogenase (decarboxylating) 1, mitochondrial uncharacterized protein glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial-like glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating) 2, mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial glycine dehydrogenase (decarboxylating), mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 7
ath00260 Glycine, serine and threonine metabolism 6
ath00630 Glyoxylate and dicarboxylate metabolism 6
ath01230 Biosynthesis of amino acids 5
ath00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00630 Glyoxylate and dicarboxylate metabolism 9
ath01200 Carbon metabolism 8
ath00260 Glycine, serine and threonine metabolism 7
ath01230 Biosynthesis of amino acids 5
ath00670 One carbon pool by folate 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 8
gma00630 Glyoxylate and dicarboxylate metabolism 6
gma00260 Glycine, serine and threonine metabolism 4
gma00710 Carbon fixation by Calvin cycle 4
gma01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00260 Glycine, serine and threonine metabolism 4
gma00630 Glyoxylate and dicarboxylate metabolism 4
gma00670 One carbon pool by folate 4
gma00785 Lipoic acid metabolism 4
gma01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 6
sly00630 Glyoxylate and dicarboxylate metabolism 4
sly00710 Carbon fixation by Calvin cycle 4
sly00260 Glycine, serine and threonine metabolism 3
sly00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 8
osa00630 Glyoxylate and dicarboxylate metabolism 6
osa01230 Biosynthesis of amino acids 5
osa00260 Glycine, serine and threonine metabolism 5
osa00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00630 Glyoxylate and dicarboxylate metabolism 7
osa01200 Carbon metabolism 6
osa00260 Glycine, serine and threonine metabolism 5
osa00670 One carbon pool by folate 4
osa01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 8
zma01200 Carbon metabolism 8
zma00630 Glyoxylate and dicarboxylate metabolism 6
zma00710 Carbon fixation by Calvin cycle 5
zma00260 Glycine, serine and threonine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01200 Carbon metabolism 6
bra00010 Glycolysis / Gluconeogenesis 3
bra00260 Glycine, serine and threonine metabolism 3
bra00630 Glyoxylate and dicarboxylate metabolism 3
bra00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00670 One carbon pool by folate 6
vvi00270 Cysteine and methionine metabolism 5
vvi01230 Biosynthesis of amino acids 5
vvi01200 Carbon metabolism 3
vvi01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00860 Porphyrin metabolism 3
vvi00630 Glyoxylate and dicarboxylate metabolism 3
vvi01200 Carbon metabolism 3
vvi00260 Glycine, serine and threonine metabolism 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 7
ppo00710 Carbon fixation by Calvin cycle 5
ppo01230 Biosynthesis of amino acids 5
ppo01240 Biosynthesis of cofactors 3
ppo00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 5
mtr00260 Glycine, serine and threonine metabolism 4
mtr00630 Glyoxylate and dicarboxylate metabolism 4
mtr01230 Biosynthesis of amino acids 3
mtr00670 One carbon pool by folate 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 12
tae01200 Carbon metabolism 12
tae00260 Glycine, serine and threonine metabolism 9
tae01230 Biosynthesis of amino acids 9
tae01210 2-Oxocarboxylic acid metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 11
tae01200 Carbon metabolism 11
tae00260 Glycine, serine and threonine metabolism 9
tae01230 Biosynthesis of amino acids 8
tae00670 One carbon pool by folate 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 7
hvu00260 Glycine, serine and threonine metabolism 5
hvu00630 Glyoxylate and dicarboxylate metabolism 4
hvu01230 Biosynthesis of amino acids 4
hvu00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00260 Glycine, serine and threonine metabolism 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 7
ghi00260 Glycine, serine and threonine metabolism 6
ghi00630 Glyoxylate and dicarboxylate metabolism 6
ghi00670 One carbon pool by folate 4
ghi00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00790 Folate biosynthesis 3
bna01240 Biosynthesis of cofactors 3
bna04981 Folate transport and metabolism 3
bna00260 Glycine, serine and threonine metabolism 3
bna00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00790 Folate biosynthesis 3
bna01240 Biosynthesis of cofactors 3
bna04981 Folate transport and metabolism 3
bna00260 Glycine, serine and threonine metabolism 3
bna00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00630 Glyoxylate and dicarboxylate metabolism 6
cre01200 Carbon metabolism 6
cre00260 Glycine, serine and threonine metabolism 5
cre00670 One carbon pool by folate 3
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00360 Phenylalanine metabolism 4
sbi00940 Phenylpropanoid biosynthesis 4
sbi01200 Carbon metabolism 4
sbi01230 Biosynthesis of amino acids 4
sbi00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 5
sot00630 Glyoxylate and dicarboxylate metabolism 4
sot00260 Glycine, serine and threonine metabolism 2
sot00710 Carbon fixation by Calvin cycle 2
sot01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 5
cit00630 Glyoxylate and dicarboxylate metabolism 4
cit00260 Glycine, serine and threonine metabolism 2
cit00670 One carbon pool by folate 2
cit00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00630 Glyoxylate and dicarboxylate metabolism 9
bdi01200 Carbon metabolism 9
bdi00260 Glycine, serine and threonine metabolism 4
bdi04146 Peroxisome 4
bdi00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 9
nta00260 Glycine, serine and threonine metabolism 8
nta00220 Arginine biosynthesis 6
nta00250 Alanine, aspartate and glutamate metabolism 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 12
nta01200 Carbon metabolism 9
nta00260 Glycine, serine and threonine metabolism 8
nta00220 Arginine biosynthesis 6
nta00250 Alanine, aspartate and glutamate metabolism 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817149 829438 100819714 100795673 101260070 4341516 4325932 541946 103850153 100266280 100266170 7470701 11415278 123070375 123078832 123444252 107958881 107907004 125609071 106364306 5718509 8066987 102601213 102627653 100845191 107783010 107781010
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