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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7470944   DNA polymerase I A, chloroplastic/mitochondrial 
 ppo-r.4   7470944   DNA polymerase I A, chloroplastic/mitochondrial 
 ppo-u.5   18095942   DNA polymerase I A, chloroplastic/mitochondrial 
 gma-u.5   100807239   DNA polymerase I A, chloroplastic/mitochondrial 
 gma-u.5   100797016   DNA polymerase I A, chloroplastic/mitochondrial 
 gma-u.5   100790704   DNA polymerase I A, chloroplastic/mitochondrial 
 mtr-u.5   11444798   DNA polymerase I A, chloroplastic/mitochondrial 
 mtr-u.5   11436067   DNA polymerase I A, chloroplastic/mitochondrial 
 mtr-u.5   11444264   DNA polymerase I A, chloroplastic/mitochondrial 
 ath-u.5   POLGAMMA1   polymerase gamma 1 
 ath-u.5   POLGAMMA2   polymerase gamma 2 
 vvi-u.5   100257153   DNA polymerase I B, chloroplastic/mitochondrial 
 sly-u.5   101252794   DNA polymerase I B, chloroplastic/mitochondrial 
 osa-u.5   4337150   DNA polymerase I A, chloroplastic-like 
 osa-u.5   4344789   DNA polymerase I A, chloroplastic-like 
 osa-u.5   4344791   DNA polymerase I B, mitochondrial-like 
 zma-u.5   103641202   DNA polymerase I A, chloroplastic 
 zma-u.5   103642101   DNA polymerase I A, chloroplastic 

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Top 50 coexpressed genes to 7470944 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7470944 (ppo-u.5 coexpression data)

CoexMap"7470944"


ppoLOC7470944 | Entrez gene ID : 7470944    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 3 3 2 1 1 3 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03030 [list] [network] DNA replication (51 genes)
pop03410 [list] [network] Base excision repair (63 genes)
pop03420 [list] [network] Nucleotide excision repair (89 genes)
pop03440 [list] [network] Homologous recombination (53 genes)
GO BP
GO:0006261 [list] [network] DNA-templated DNA replication  (95 genes)  IEA  
GO:0006302 [list] [network] double-strand break repair  (102 genes)  IEA  
GO CC
GO MF
GO:0003887 [list] [network] DNA-directed DNA polymerase activity  (21 genes)  IEA  
GO:0008408 [list] [network] 3'-5' exonuclease activity  (72 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2205 genes)  IEA  
Protein XP_024437161.2 [sequence] [blastp]
XP_024437163.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  chlo_mito 4,  cyto_mito 1  (predict for XP_024437161.2)
nucl 5,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_024437163.2)
Subcellular
localization
TargetP
chlo 9  (predict for XP_024437161.2)
other 7,  mito 5  (predict for XP_024437163.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7470944

.
ppo-r.4
for
7470944

.
ppo-u.5
for
18095942

.
gma-u.5
for
100807239

.
gma-u.5
for
100797016

.
gma-u.5
for
100790704

.
mtr-u.5
for
11444798

.
mtr-u.5
for
11436067

.
mtr-u.5
for
11444264

.
ath-u.5
for
POLGAMMA1

.
ath-u.5
for
POLGAMMA2

.
vvi-u.5
for
100257153

.
sly-u.5
for
101252794

.
osa-u.5
for
4337150

.
osa-u.5
for
4344789

.
osa-u.5
for
4344791

.
zma-u.5
for
103641202

.
zma-u.5
for
103642101

.


Ortholog ID: 4387
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi bdi nta nta
Symbol POLGAMMA2 POLGAMMA1 LOC100807239 LOC100797016 LOC101252794 LOC4344789 LOC4344791 LOC103641202 LOC103642101 LOC103869311 LOC103868605 LOC100257153 LOC18095942 LOC7470944 LOC11436067 LOC11444264 LOC123047203 LOC123190853 LOC123428218 LOC107938642 LOC107917795 LOC106385435 LOC106377588 CHLRE_08g363837v5 LOC8080898 LOC8068448 LOC102581629 LOC102617268 LOC100833898 LOC100823216 LOC107802958 LOC107808080
Function* polymerase gamma 2 polymerase gamma 1 DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic-like DNA polymerase I B, mitochondrial-like DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic-like DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial uncharacterized protein DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I B, chloroplastic/mitochondrial-like DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I A, chloroplastic DNA polymerase I A, chloroplastic DNA polymerase I B, chloroplastic/mitochondrial DNA polymerase I B, chloroplastic/mitochondrial-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 2
ath03410 Base excision repair 2
ath03420 Nucleotide excision repair 2
ath03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00061 Fatty acid biosynthesis 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 2
gma03030 DNA replication 2
gma03410 Base excision repair 2
gma03420 Nucleotide excision repair 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03018 RNA degradation 2
osa03440 Homologous recombination 2
osa03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
zma04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 2
mtr03410 Base excision repair 2
mtr03420 Nucleotide excision repair 2
mtr03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 3
tae00970 Aminoacyl-tRNA biosynthesis 3
tae01240 Biosynthesis of cofactors 3
tae03040 Spliceosome 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 3
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 3
bna03410 Base excision repair 3
bna03420 Nucleotide excision repair 3
bna03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03030 DNA replication 5
bna03410 Base excision repair 5
bna03420 Nucleotide excision repair 5
bna03440 Homologous recombination 3
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03030 DNA replication 3
nta03410 Base excision repair 3
nta03420 Nucleotide excision repair 3
nta03440 Homologous recombination 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841506 821600 100807239 100797016 101252794 4344789 4344791 103641202 103642101 103869311 103868605 100257153 18095942 7470944 11436067 11444264 123047203 123190853 123428218 107938642 107917795 106385435 106377588 5721623 8080898 8068448 102581629 102617268 100833898 100823216 107802958 107808080
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