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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7472004   tryptophan synthase alpha chain 
 ppo-r.4   7472004   tryptophan synthase alpha chain 
 ppo-m.4   7472004   tryptophan synthase alpha chain 
 ppo-u.5   7476880   tryptophan synthase alpha chain 
 gma-u.5   TSA   tryptophan synthase alpha chain 
 gma-u.5   100808400   tryptophan synthase alpha chain 
 mtr-u.5   25499341   tryptophan synthase alpha chain 
 mtr-u.5   25499196   tryptophan synthase alpha chain 
 ath-u.5   TSA1   tryptophan synthase alpha chain 
 ath-u.5   AT4G02610   Aldolase-type TIM barrel family protein 
 vvi-u.5   100252844   tryptophan synthase alpha chain 
 sly-u.5   101255433   tryptophan synthase alpha chain 
 osa-u.5   9270552   indole-3-glycerol phosphate lyase, chloroplastic 
 osa-u.5   4342571   tryptophan synthase alpha chain 
 osa-u.5   4334427   indole-3-glycerol phosphate lyase, chloroplastic 
 zma-u.5   100273163   uncharacterized LOC100273163 
 zma-u.5   541855   indole-3-glycerol phosphate lyase 1 
 zma-u.5   103644181   tryptophan synthase alpha chain, chloroplastic 

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Top 50 coexpressed genes to 7472004 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7472004 (ppo-u.5 coexpression data)

CoexMap"7472004"


ppoLOC7472004 | Entrez gene ID : 7472004    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 4 2 2 2 1 1 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00260 [list] [network] Glycine, serine and threonine metabolism (86 genes)
pop00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (58 genes)
pop01230 [list] [network] Biosynthesis of amino acids (287 genes)
GO BP
GO:0000162 [list] [network] L-tryptophan biosynthetic process  (20 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO:0005829 [list] [network] cytosol  (1141 genes)  IEA  
GO MF
GO:0004834 [list] [network] tryptophan synthase activity  (6 genes)  IEA  
Protein XP_002300807.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  cyto 1,  pero 1,  cyto_pero 1  (predict for XP_002300807.1)
Subcellular
localization
TargetP
chlo 6  (predict for XP_002300807.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7472004

.
ppo-r.4
for
7472004

.
ppo-m.4
for
7472004

.
ppo-u.5
for
7476880

.
gma-u.5
for
TSA

.
gma-u.5
for
100808400

.
mtr-u.5
for
25499341

.
mtr-u.5
for
25499196

.
ath-u.5
for
TSA1

.
ath-u.5
for
AT4G02610

.
vvi-u.5
for
100252844

.
sly-u.5
for
101255433

.
osa-u.5
for
9270552

.
osa-u.5
for
4342571

.
osa-u.5
for
4334427

.
zma-u.5
for
100273163

.
zma-u.5
for
541855

.
zma-u.5
for
103644181

.


Ortholog ID: 3237
Species ath ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit cit bdi bdi nta nta
Symbol TSA1 AT4G02610 TSA LOC100808400 LOC101255433 LOC9270552 LOC4342571 LOC100273163 LOC103644181 LOC103836728 LOC103841367 LOC100252844 LOC7472004 LOC7476880 LOC25499196 LOC25499341 LOC123123212 LOC123149077 LOC123442434 LOC123452721 LOC107940215 LOC107936474 LOC106415880 LOC106426750 CHLRE_12g528700v5 LOC8056620 LOC102592296 LOC102608720 LOC102608777 LOC100838412 LOC100834829 LOC107823799 LOC107787718
Function* tryptophan synthase alpha chain Aldolase-type TIM barrel family protein tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain indole-3-glycerol phosphate lyase, chloroplastic tryptophan synthase alpha chain uncharacterized LOC100273163 tryptophan synthase alpha chain, chloroplastic tryptophan synthase alpha chain tryptophan synthase alpha chain, chloroplastic tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain indole-3-glycerol phosphate lyase, chloroplastic-like tryptophan synthase alpha chain-like tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain, chloroplastic tryptophan synthase alpha chain uncharacterized protein tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain-like tryptophan synthase alpha chain-like tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain tryptophan synthase alpha chain-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 11
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
ath00260 Glycine, serine and threonine metabolism 6
ath00270 Cysteine and methionine metabolism 5
ath01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00541 Biosynthesis of various nucleotide sugars 2
ath01250 Biosynthesis of nucleotide sugars 2
ath00561 Glycerolipid metabolism 2
ath01200 Carbon metabolism 2
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 5
gma00260 Glycine, serine and threonine metabolism 3
gma01230 Biosynthesis of amino acids 3
gma00190 Oxidative phosphorylation 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 6
gma03050 Proteasome 4
gma00260 Glycine, serine and threonine metabolism 2
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 7
sly00340 Histidine metabolism 3
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
sly00250 Alanine, aspartate and glutamate metabolism 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa00402 Benzoxazinoid biosynthesis 2
osa00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 11
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
osa00260 Glycine, serine and threonine metabolism 3
osa00350 Tyrosine metabolism 3
osa00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00402 Benzoxazinoid biosynthesis 2
zma00999 Biosynthesis of various plant secondary metabolites 2
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 2
zma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00260 Glycine, serine and threonine metabolism 2
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00100 Steroid biosynthesis 2
bra00020 Citrate cycle (TCA cycle) 2
bra00270 Cysteine and methionine metabolism 2
bra01200 Carbon metabolism 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 13
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bra00260 Glycine, serine and threonine metabolism 6
bra00270 Cysteine and methionine metabolism 4
bra01200 Carbon metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 8
vvi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01240 Biosynthesis of cofactors 2
ppo03010 Ribosome 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 10
mtr01230 Biosynthesis of amino acids 3
mtr00260 Glycine, serine and threonine metabolism 2
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 5
mtr03020 RNA polymerase 2
mtr03420 Nucleotide excision repair 2
mtr03050 Proteasome 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 14
tae01230 Biosynthesis of amino acids 14
tae00260 Glycine, serine and threonine metabolism 6
tae04075 Plant hormone signal transduction 2
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01240 Biosynthesis of cofactors 2
hvu01200 Carbon metabolism 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 5
ghi00260 Glycine, serine and threonine metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna01230 Biosynthesis of amino acids 13
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
bna00260 Glycine, serine and threonine metabolism 6
bna00270 Cysteine and methionine metabolism 4
bna00750 Vitamin B6 metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 5
bna04145 Phagosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cre01230 Biosynthesis of amino acids 4
cre00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sbi01230 Biosynthesis of amino acids 9
sbi00380 Tryptophan metabolism 3
sbi00260 Glycine, serine and threonine metabolism 2
sbi00350 Tyrosine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 6
sot00290 Valine, leucine and isoleucine biosynthesis 3
sot00770 Pantothenate and CoA biosynthesis 3
sot01210 2-Oxocarboxylic acid metabolism 3
sot01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 6
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00591 Linoleic acid metabolism 3
bdi00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
nta03060 Protein export 2
nta00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00860 Porphyrin metabolism 4
nta01240 Biosynthesis of cofactors 4
nta00260 Glycine, serine and threonine metabolism 3
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
nta01230 Biosynthesis of amino acids 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824629 828226 732610 100808400 101255433 9270552 4342571 100273163 103644181 103836728 103841367 100252844 7472004 7476880 25499196 25499341 123123212 123149077 123442434 123452721 107940215 107936474 106415880 106426750 5722439 8056620 102592296 102608720 102608777 100838412 100834829 107823799 107787718
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