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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7472360   ubiquitin carboxyl-terminal hydrolase 25 
 ppo-r.4   7472360   ubiquitin carboxyl-terminal hydrolase 25 
 ppo-u.5   18095524   ubiquitin carboxyl-terminal hydrolase 25 
 gma-u.5   100775539   ubiquitin carboxyl-terminal hydrolase 25 
 gma-u.5   100820436   ubiquitin carboxyl-terminal hydrolase 25 
 mtr-u.5   25487057   ubiquitin carboxyl-terminal hydrolase 25 
 ath-u.5   UBP25   ubiquitin-specific protease 25 
 vvi-u.5   100253154   ubiquitin carboxyl-terminal hydrolase 25 
 sly-u.5   101243726   ubiquitin carboxyl-terminal hydrolase 25 
 osa-u.5   4339279   ubiquitin carboxyl-terminal hydrolase 25 
 zma-u.5   103645919   uncharacterized LOC103645919 
 zma-u.5   103635830   ubiquitin carboxyl-terminal hydrolase 25 
 zma-u.5   100281515   UBP25 

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Top 50 coexpressed genes to 7472360 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7472360 (ppo-u.5 coexpression data)

CoexMap"7472360"


ppoLOC7472360 | Entrez gene ID : 7472360    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016579 [list] [network] protein deubiquitination  (97 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (1141 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (76 genes)  IEA  
GO:0004197 [list] [network] cysteine-type endopeptidase activity  (89 genes)  IEA  
Protein XP_024437013.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1  (predict for XP_024437013.1)
Subcellular
localization
TargetP
mito 4  (predict for XP_024437013.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7472360

.
ppo-r.4
for
7472360

.
ppo-u.5
for
18095524

.
gma-u.5
for
100775539

.
gma-u.5
for
100820436

.
mtr-u.5
for
25487057

.
ath-u.5
for
UBP25

.
vvi-u.5
for
100253154

.
sly-u.5
for
101243726

.
osa-u.5
for
4339279

.
zma-u.5
for
103645919

.
zma-u.5
for
103635830

.
zma-u.5
for
100281515

.


Ortholog ID: 7566
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol UBP25 LOC100775539 LOC100820436 LOC101243726 LOC4339279 LOC103635830 LOC100281515 LOC103870030 LOC100253154 LOC18095524 LOC7472360 LOC25487057 LOC123062316 LOC123139538 LOC123447496 LOC107928360 LOC107909171 LOC106394159 LOC106387061 LOC110430166 LOC102579938 LOC102618430 LOC100843351 LOC107807783 LOC107760698
Function* ubiquitin-specific protease 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 UBP25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25-like ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25-like ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25 ubiquitin carboxyl-terminal hydrolase 25-like ubiquitin carboxyl-terminal hydrolase 25
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 3
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 4
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma04120 Ubiquitin mediated proteolysis 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00240 Pyrimidine metabolism 3
tae01232 Nucleotide metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 5
bna03018 RNA degradation 3
bna00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820662 100775539 100820436 101243726 4339279 103635830 100281515 103870030 100253154 18095524 7472360 25487057 123062316 123139538 123447496 107928360 107909171 106394159 106387061 110430166 102579938 102618430 100843351 107807783 107760698
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