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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7472482   transcription elongation factor TFIIS 
 ppo-r.4   7472482   transcription elongation factor TFIIS 
 ppo-u.5   7484632   transcription elongation factor TFIIS 
 gma-u.5   100811982   transcription elongation factor TFIIS 
 gma-u.5   100776046   putative transcription elongation factor S-II-like 
 mtr-u.5   25489816   transcription elongation factor TFIIS 
 ath-u.5   TFIIS   transcript elongation factor IIS 
 vvi-u.5   104881085   transcription elongation factor TFIIS 
 vvi-u.5   100263760   transcription elongation factor TFIIS 
 sly-u.5   101267119   transcription elongation factor TFIIS 
 sly-u.5   101254979   transcription elongation factor TFIIS 
 osa-u.5   4342769   transcription elongation factor TFIIS 
 zma-u.5   100274429   uncharacterized LOC100274429 
 zma-u.5   100282906   transcription elongation factor A protein 2 
 zma-u.5   118474708   transcription elongation factor TFIIS 

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Top 50 coexpressed genes to 7472482 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7472482 (ppo-u.5 coexpression data)

CoexMap"7472482"


ppoLOC7472482 | Entrez gene ID : 7472482    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 2 2 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006368 [list] [network] transcription elongation by RNA polymerase II  (25 genes)  IEA  
GO:0006351 [list] [network] DNA-templated transcription  (264 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4002 genes)  IEA  
Protein XP_024443807.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 4,  cyto 1,  plas 1,  pero 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_024443807.1)
Subcellular
localization
TargetP
other 8  (predict for XP_024443807.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7472482

.
ppo-r.4
for
7472482

.
ppo-u.5
for
7484632

.
gma-u.5
for
100811982

.
gma-u.5
for
100776046

.
mtr-u.5
for
25489816

.
ath-u.5
for
TFIIS

.
vvi-u.5
for
104881085

.
vvi-u.5
for
100263760

.
sly-u.5
for
101267119

.
sly-u.5
for
101254979

.
osa-u.5
for
4342769

.
zma-u.5
for
100274429

.
zma-u.5
for
100282906

.
zma-u.5
for
118474708

.


Ortholog ID: 4699
Species ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit bdi nta nta
Symbol TFIIS LOC100776046 LOC100811982 LOC101254979 LOC101267119 LOC4342769 LOC100282906 LOC118474708 LOC103857789 LOC103867092 LOC100263760 LOC104881085 LOC7472482 LOC7484632 LOC25489816 LOC123105610 LOC123113929 LOC123452958 LOC107914501 LOC107896850 LOC106438146 LOC106450961 CHLRE_09g386350v5 LOC8057071 LOC102584918 LOC102581999 LOC102631170 LOC100837763 LOC107775588 LOC107815837
Function* transcript elongation factor IIS putative transcription elongation factor S-II-like transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor A protein 2 transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS-like transcription elongation factor TFIIS uncharacterized protein transcription elongation factor TFIIS transcription elongation factor TFIIS-like transcription elongation factor TFIIS-like transcription elongation factor TFIIS transcription elongation factor TFIIS transcription elongation factor TFIIS-like transcription elongation factor TFIIS
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03018 RNA degradation 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma04141 Protein processing in endoplasmic reticulum 2
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 4
sly03040 Spliceosome 3
sly03008 Ribosome biogenesis in eukaryotes 3
sly03013 Nucleocytoplasmic transport 2
sly03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
bra03410 Base excision repair 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 3
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi03040 Spliceosome 2
ghi03082 ATP-dependent chromatin remodeling 2
ghi03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04075 Plant hormone signal transduction 7
nta04016 MAPK signaling pathway - plant 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818438 100776046 100811982 101254979 101267119 4342769 100282906 118474708 103857789 103867092 100263760 104881085 7472482 7484632 25489816 123105610 123113929 123452958 107914501 107896850 106438146 106450961 5720845 8057071 102584918 102581999 102631170 100837763 107775588 107815837
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