ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7473301	nuclear transcription factor Y subunit C-3
ppo-r.4	7473301	nuclear transcription factor Y subunit C-3
ppo-m.4	7473301	nuclear transcription factor Y subunit C-3
ppo-u.5	7492093	nuclear transcription factor Y subunit C-2
ppo-u.5	7471426	nuclear transcription factor Y subunit C-2
ppo-u.5	18102323	nuclear transcription factor Y subunit C-9
gma-u.5	NF-YC15	nuclear factor Y transcription factor
gma-u.5	NF-YC07	nuclear factor Y transcription factor family protein
gma-u.5	NF-YC14	nuclear factor Y transcription factor
mtr-u.5	11410747	nuclear transcription factor Y subunit C-3
mtr-u.5	120578221	nuclear transcription factor Y subunit C-2
mtr-u.5	11429780	nuclear transcription factor Y subunit C-3
ath-u.5	NF-YC1	nuclear factor Y, subunit C1
ath-u.5	NF-YC4	nuclear factor Y, subunit C4
vvi-u.5	100266507	nuclear transcription factor Y subunit C-3
vvi-u.5	100243367	nuclear transcription factor Y subunit C-2
vvi-u.5	100258035	nuclear transcription factor Y subunit C-9
sly-u.5	101247122	nuclear transcription factor Y subunit C-1
sly-u.5	CIP2b	CONSTANS interacting protein 2b
sly-u.5	CIP2a	CONSTANS interacting protein 2a
osa-u.5	4347391	nuclear transcription factor Y subunit C-6-like
osa-u.5	9266204	nuclear transcription factor Y subunit C-2-like
osa-u.5	4328444	nuclear transcription factor Y subunit C-4-like
zma-u.5	100277570	Nuclear transcription factor Y subunit C-9
zma-u.5	100285814	uncharacterized LOC100285814
zma-u.5	100283252	nuclear transcription factor Y subunit C-2

Top 50 coexpressed genes to 7473301 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7473301 (ppo-u.5 coexpression data)

CoexMap"7473301"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1948 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3662 genes)

IEA

GO MF

GO:0001228 [list] [network] DNA-binding transcription activator activity, RNA polymerase II-specific	(27 genes)	IEA
GO:0046982 [list] [network] protein heterodimerization activity	(111 genes)	IEA
GO:0003677 [list] [network] DNA binding	(2205 genes)	IEA

Protein

XP_002319553.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1

(predict for XP_002319553.1)

Subcellular
localization
TargetP

other 7

(predict for XP_002319553.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7473301	ppo-r.4 for 7473301	ppo-m.4 for 7473301	ppo-u.5 for 7492093	ppo-u.5 for 7471426	ppo-u.5 for 18102323	gma-u.5 for NF-YC15	gma-u.5 for NF-YC07	gma-u.5 for NF-YC14	mtr-u.5 for 11410747	mtr-u.5 for 120578221	mtr-u.5 for 11429780	ath-u.5 for NF-YC1	ath-u.5 for NF-YC4	vvi-u.5 for 100266507	vvi-u.5 for 100243367	vvi-u.5 for 100258035	sly-u.5 for 101247122	sly-u.5 for CIP2b	sly-u.5 for CIP2a	osa-u.5 for 4347391	osa-u.5 for 9266204	osa-u.5 for 4328444	zma-u.5 for 100277570	zma-u.5 for 100285814	zma-u.5 for 100283252

Ortholog

Ortholog ID: 623

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

LOC7454724

NF-YC04

NF-YC07

NF-YC9

CIP2b

CIP2a

Function^*

nuclear transcription factor Y subunit C-1

nuclear factor Y transcription factor family protein

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-1

nuclear factor Y, subunit C9

nuclear transcription factor Y subunit C-9

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-9

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-9

CONSTANS interacting protein 2b

CONSTANS interacting protein 2a

nuclear transcription factor Y subunit C-9-like

nuclear transcription factor Y subunit C-1-like

nuclear transcription factor Y subunit C-3

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-4-like

nuclear transcription factor Y subunit C-2-like

nuclear transcription factor Y subunit C-1

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-6

nuclear transcription factor Y subunit C-2

nuclear transcription factor Y subunit C-6-like

nuclear transcription factor Y subunit C-6

nuclear transcription factor Y subunit C-4

nuclear transcription factor Y subunit C-6

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	4
ppo00860	Porphyrin metabolism	3
ppo01240	Biosynthesis of cofactors	3
ppo04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04814	Motor proteins	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	9
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04141	Protein processing in endoplasmic reticulum	3
bra03083	Polycomb repressive complex	2
bra04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra01200	Carbon metabolism	3
bra00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04016	MAPK signaling pathway - plant	2
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00564	Glycerophospholipid metabolism	2
bna00100	Steroid biosynthesis	2
bna04142	Lysosome	2
bna04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04141	Protein processing in endoplasmic reticulum	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma01200	Carbon metabolism	3
zma00196	Photosynthesis - antenna proteins	2
zma00710	Carbon fixation by Calvin cycle	2
zma00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03083	Polycomb repressive complex	2
zma04120	Ubiquitin mediated proteolysis	2
zma04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00460	Cyanoamino acid metabolism	3
tae00500	Starch and sucrose metabolism	3
tae00999	Biosynthesis of various plant secondary metabolites	3
tae00630	Glyoxylate and dicarboxylate metabolism	3
tae01200	Carbon metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu01230	Biosynthesis of amino acids	2
hvu00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	2
bdi03410	Base excision repair	2
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01240	Biosynthesis of cofactors	2
cre03015	mRNA surveillance pathway	2

Expression

Expression pattern

Entrez Gene ID^*

7454724

100818447

100776494

11410747

11429705

837417

103843367

103873128

100266507

100243367

107920899

107939338

106406926

106353197

102628121

102609372

778249

778347

102587685

102603380

107832065

107797519

4341785

9266204

100281601

100273685

123167754

123092752

123408918

123399206

8055845

8061586

100840477

100842288

5719754

The preparation time of this page was 0.2 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	bdi	hvu	bra	cit	bna	sbi	ghi	sot	nta	cre	tae
Paralog	6	3	3	2	3	3	3	3	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7473301 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7473301 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**