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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   18098873   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 gma-u.5   100788604   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 vvi-u.5   100253776   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ghi-r.1   107895018   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ghi-r.1   107948831   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 cit-r.1   102608214   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like 
 sly-u.5   101258500   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 sot-r.1   102578356   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like 
 nta-r.1   107767176   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 nta-r.1   107777512   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like 

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Top 50 coexpressed genes to 18098873 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 18098873 (ppo-u.5 coexpression data)

CoexMap"7473893"


ppoLOC7473893 | Entrez gene ID : 7473893    
Species ppo gma vvi ghi cit sly sot nta bdi osa tae bna zma cre mtr sbi bra ath hvu
Paralog 1 1 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (58 genes)
pop00999 [list] [network] Biosynthesis of various plant secondary metabolites (81 genes)
pop01230 [list] [network] Biosynthesis of amino acids (287 genes)
GO BP
GO:0019632 [list] [network] shikimate metabolic process  (6 genes)  IEA  
GO:0009423 [list] [network] chorismate biosynthetic process  (10 genes)  IEA  
GO CC
GO MF
GO:0003855 [list] [network] 3-dehydroquinate dehydratase activity  (6 genes)  IEA  
GO:0004764 [list] [network] shikimate 3-dehydrogenase (NADP+) activity  (6 genes)  IEA  
Protein XP_024439669.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 1,  E.R. 1,  cyto_E.R. 1  (predict for XP_024439669.2)
Subcellular
localization
TargetP
other 3,  mito 3  (predict for XP_024439669.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
18098873
gma-u.5
for
100788604
vvi-u.5
for
100253776
ghi-r.1
for
107895018
ghi-r.1
for
107948831
cit-r.1
for
102608214
sly-u.5
for
101258500
sot-r.1
for
102578356
nta-r.1
for
107767176
nta-r.1
for
107777512


Ortholog ID: 14977
Species ppo gma vvi ghi ghi cit sly sot nta nta
Symbol LOC18098873 LOC100788604 LOC100253776 LOC107895018 LOC107948831 LOC102608214 LOC101258500 LOC102578356 LOC107767176 LOC107777512
Function* bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00940 Phenylpropanoid biosynthesis 7
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
ppo01230 Biosynthesis of amino acids 5
ppo00360 Phenylalanine metabolism 4
ppo00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 3
gma00562 Inositol phosphate metabolism 3
gma01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi01230 Biosynthesis of amino acids 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi01230 Biosynthesis of amino acids 2
ghi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cit01230 Biosynthesis of amino acids 3
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 8
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
sly01200 Carbon metabolism 4
sly00010 Glycolysis / Gluconeogenesis 2
sly00020 Citrate cycle (TCA cycle) 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
sot01230 Biosynthesis of amino acids 10
sot00940 Phenylpropanoid biosynthesis 5
sot00941 Flavonoid biosynthesis 3
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
nta01230 Biosynthesis of amino acids 8
nta00999 Biosynthesis of various plant secondary metabolites 5
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
nta00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
nta00999 Biosynthesis of various plant secondary metabolites 5
nta01230 Biosynthesis of amino acids 5
nta04626 Plant-pathogen interaction 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 18098873 100788604 100253776 107895018 107948831 102608214 101258500 102578356 107767176 107777512
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