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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7474619   rubisco accumulation factor 1.1, chloroplastic 
 ppo-r.4   7474619   rubisco accumulation factor 1.1, chloroplastic 
 ppo-m.4   7474619   rubisco accumulation factor 1.1, chloroplastic 
 gma-u.5   100793519   rubisco accumulation factor 1.1, chloroplastic 
 mtr-u.5   11435114   rubisco accumulation factor 1.1, chloroplastic 
 ath-u.5   AT3G04550   rubisco accumulation factor-like protein 
 ath-u.5   AT5G28500   rubisco accumulation factor-like protein 
 vvi-u.5   100256476   rubisco accumulation factor 1.1, chloroplastic 
 sly-u.5   101251433   rubisco accumulation factor 1.1, chloroplastic 
 osa-u.5   4348745   rubisco accumulation factor 1, chloroplastic-like 
 zma-u.5   100272838   Rubisco accumulation factor 1, chloroplastic 

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Top 50 coexpressed genes to 7474619 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7474619 (ppo-u.5 coexpression data)

CoexMap"7474619"


ppoLOC7474619 | Entrez gene ID : 7474619    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
Protein XP_002319651.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  chlo_mito 5  (predict for XP_002319651.1)
Subcellular
localization
TargetP
chlo 7  (predict for XP_002319651.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7474619

.
ppo-r.4
for
7474619

.
ppo-m.4
for
7474619

.
gma-u.5
for
100793519

.
mtr-u.5
for
11435114

.
ath-u.5
for
AT3G04550

.
ath-u.5
for
AT5G28500

.
vvi-u.5
for
100256476

.
sly-u.5
for
101251433

.
osa-u.5
for
4348745

.
zma-u.5
for
100272838

.


Ortholog ID: 7558
Species ath ath gma sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT3G04550 AT5G28500 LOC100793519 LOC101251433 LOC4348745 LOC100272838 LOC103874579 LOC103850044 LOC100256476 LOC7474619 LOC11435114 LOC123180946 LOC123119513 LOC123429906 LOC107893598 LOC107920363 LOC125602817 LOC125589598 CHLRE_06g308450v5 LOC8085879 LOC102605426 LOC102614377 LOC100844485 LOC107797026 LOC107808875
Function* rubisco accumulation factor-like protein rubisco accumulation factor-like protein rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1, chloroplastic-like Rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.2, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1, chloroplastic-like rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1.1, chloroplastic-like rubisco accumulation factor 1.1, chloroplastic-like uncharacterized protein rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1.1, chloroplastic rubisco accumulation factor 1, chloroplastic rubisco accumulation factor 1.2, chloroplastic-like rubisco accumulation factor 1.2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra01230 Biosynthesis of amino acids 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 6
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
hvu00860 Porphyrin metabolism 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00030 Pentose phosphate pathway 2
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
cit01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819611 832943 100793519 101251433 4348745 100272838 103874579 103850044 100256476 7474619 11435114 123180946 123119513 123429906 107893598 107920363 125602817 125589598 66053915 8085879 102605426 102614377 100844485 107797026 107808875
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