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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7474813   shikimate kinase, chloroplastic 
 ppo-r.4   7474813   shikimate kinase, chloroplastic 
 ppo-u.5   7486337   shikimate kinase 1, chloroplastic 
 gma-u.5   100784290   shikimate kinase 1, chloroplastic 
 gma-u.5   100807736   shikimate kinase-like protein 
 mtr-u.5   120577441   shikimate kinase 1, chloroplastic 
 ath-u.5   SK1   shikimate kinase 1 
 ath-u.5   SK2   shikimate kinase 2 
 vvi-u.5   100262762   shikimate kinase 
 vvi-u.5   100244261   shikimate kinase 3, chloroplastic 
 sly-u.5   SK   shikimate kinase precursor 
 osa-u.5   4337165   shikimate kinase 3, chloroplastic-like 
 osa-u.5   4330732   shikimate kinase 1, chloroplastic-like 
 osa-u.5   4340547   shikimate kinase 2, chloroplastic-like 
 zma-u.5   100191326   Shikimate kinase 1 chloroplastic 
 zma-u.5   100283304   shikimate kinase 
 zma-u.5   100286040   shikimate kinase 

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Top 50 coexpressed genes to 7474813 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7474813 (ppo-u.5 coexpression data)

CoexMap"7474813"


ppoLOC7474813 | Entrez gene ID : 7474813    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 2 2 1 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (58 genes)
pop01230 [list] [network] Biosynthesis of amino acids (287 genes)
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
GO:0004765 [list] [network] shikimate kinase activity  (3 genes)  IEA  
Protein XP_002310602.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  mito 1,  golg_plas 1  (predict for XP_002310602.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002310602.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7474813

.
ppo-r.4
for
7474813

.
ppo-u.5
for
7486337

.
gma-u.5
for
100784290

.
gma-u.5
for
100807736

.
mtr-u.5
for
120577441

.
ath-u.5
for
SK1

.
ath-u.5
for
SK2

.
vvi-u.5
for
100262762

.
vvi-u.5
for
100244261

.
sly-u.5
for
SK

.
osa-u.5
for
4337165

.
osa-u.5
for
4330732

.
osa-u.5
for
4340547

.
zma-u.5
for
100191326

.
zma-u.5
for
100283304

.
zma-u.5
for
100286040

.


Ortholog ID: 2879
Species ath ath gma gma sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna cre sbi sot cit cit bdi nta nta
Symbol SK1 SK2 LOC100797982 LOC100807736 SK LOC4337165 LOC4340547 LOC100286040 LOC100191326 LOC103850170 LOC103864307 LOC100244261 LOC100262762 LOC7474813 LOC7486337 LOC120577441 LOC123145478 LOC123047183 LOC123412235 LOC123403369 LOC107897604 LOC107947315 LOC106420775 CHLRE_10g436350v5 LOC110434391 LOC102589179 LOC102624107 LOC102616277 LOC100831349 LOC107818889 LOC107767446
Function* shikimate kinase 1 shikimate kinase 2 shikimate kinase, chloroplastic shikimate kinase-like protein shikimate kinase precursor shikimate kinase 3, chloroplastic-like shikimate kinase 2, chloroplastic-like shikimate kinase Shikimate kinase 1 chloroplastic shikimate kinase 2, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 3, chloroplastic shikimate kinase shikimate kinase, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 3, chloroplastic shikimate kinase 2, chloroplastic-like shikimate kinase 1, chloroplastic-like shikimate kinase 1, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 1, chloroplastic uncharacterized protein shikimate kinase 1, chloroplastic-like shikimate kinase, chloroplastic shikimate kinase 1, chloroplastic shikimate kinase 2, chloroplastic-like shikimate kinase 1, chloroplastic shikimate kinase, chloroplastic-like shikimate kinase, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 8
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ath01200 Carbon metabolism 3
ath00350 Tyrosine metabolism 2
ath00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 4
gma01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
gma00010 Glycolysis / Gluconeogenesis 2
gma00020 Citrate cycle (TCA cycle) 2
gma00620 Pyruvate metabolism 2
gma00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
sly01230 Biosynthesis of amino acids 8
sly00940 Phenylpropanoid biosynthesis 6
sly00360 Phenylalanine metabolism 3
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00940 Phenylpropanoid biosynthesis 5
osa01230 Biosynthesis of amino acids 4
osa00941 Flavonoid biosynthesis 3
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
osa00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
osa01230 Biosynthesis of amino acids 5
osa00360 Phenylalanine metabolism 3
osa00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
zma01230 Biosynthesis of amino acids 2
zma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01200 Carbon metabolism 4
zma01230 Biosynthesis of amino acids 4
zma00710 Carbon fixation by Calvin cycle 3
zma00010 Glycolysis / Gluconeogenesis 3
zma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bra01230 Biosynthesis of amino acids 6
bra00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00940 Phenylpropanoid biosynthesis 13
bra00941 Flavonoid biosynthesis 5
bra00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 5
bra00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
bra00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00941 Flavonoid biosynthesis 7
vvi04712 Circadian rhythm - plant 3
vvi00940 Phenylpropanoid biosynthesis 3
vvi00360 Phenylalanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00940 Phenylpropanoid biosynthesis 9
vvi01230 Biosynthesis of amino acids 8
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
vvi00941 Flavonoid biosynthesis 4
vvi00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 13
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00670 One carbon pool by folate 5
ppo01240 Biosynthesis of cofactors 5
ppo00270 Cysteine and methionine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 5
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ppo00940 Phenylpropanoid biosynthesis 3
ppo00941 Flavonoid biosynthesis 2
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 3
mtr00270 Cysteine and methionine metabolism 2
mtr01200 Carbon metabolism 2
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
tae00230 Purine metabolism 2
tae00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00360 Phenylalanine metabolism 4
hvu00940 Phenylpropanoid biosynthesis 4
hvu01230 Biosynthesis of amino acids 3
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu01230 Biosynthesis of amino acids 3
hvu00260 Glycine, serine and threonine metabolism 2
hvu00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
ghi01230 Biosynthesis of amino acids 9
ghi00350 Tyrosine metabolism 5
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ghi01230 Biosynthesis of amino acids 7
ghi00350 Tyrosine metabolism 3
ghi00360 Phenylalanine metabolism 3
ghi00950 Isoquinoline alkaloid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 6
bna00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
bna00360 Phenylalanine metabolism 2
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 10
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
sbi01200 Carbon metabolism 5
sbi00010 Glycolysis / Gluconeogenesis 4
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sot01230 Biosynthesis of amino acids 9
sot00940 Phenylpropanoid biosynthesis 5
sot00941 Flavonoid biosynthesis 3
sot00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01230 Biosynthesis of amino acids 4
cit01210 2-Oxocarboxylic acid metabolism 2
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00940 Phenylpropanoid biosynthesis 6
nta00941 Flavonoid biosynthesis 6
nta00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 6
nta00130 Ubiquinone and other terpenoid-quinone biosynthesis 4
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 816730 830108 100797982 100807736 544078 4337165 4340547 100286040 100191326 103850170 103864307 100244261 100262762 7474813 7486337 120577441 123145478 123047183 123412235 123403369 107897604 107947315 106420775 5716011 110434391 102589179 102624107 102616277 100831349 107818889 107767446
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