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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7475389   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ppo-r.4   7475389   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ppo-m.4   7475389   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ppo-u.5   7473892   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 gma-u.5   100811217   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 mtr-u.5   112419533   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 ath-u.5   MEE32   dehydroquinate dehydratase, putative / shikimate dehydrogenase 
 vvi-u.5   100243536   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 vvi-u.5   100248678   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 vvi-u.5   100242676   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 sly-u.5   543548   dehydroquinate dehydratase/shikimate:NADP oxidoreductase 
 osa-u.5   4352411   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 osa-u.5   4325446   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 osa-u.5   4325444   bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic 
 zma-u.5   100191894   shikimate dehydrogenase 1 
 zma-u.5   100285997   uncharacterized LOC100285997 
 zma-u.5   100272333   Bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase chloroplastic 

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Top 50 coexpressed genes to 7475389 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7475389 (ppo-u.5 coexpression data)

CoexMap"7475389"


ppoLOC7475389 | Entrez gene ID : 7475389    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 4 1 1 1 3 1 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (58 genes)
pop00999 [list] [network] Biosynthesis of various plant secondary metabolites (81 genes)
pop01230 [list] [network] Biosynthesis of amino acids (287 genes)
GO BP
GO:0019632 [list] [network] shikimate metabolic process  (6 genes)  IEA  
GO:0009423 [list] [network] chorismate biosynthetic process  (10 genes)  IEA  
GO CC
GO MF
GO:0003855 [list] [network] 3-dehydroquinate dehydratase activity  (6 genes)  IEA  
GO:0004764 [list] [network] shikimate 3-dehydrogenase (NADP+) activity  (6 genes)  IEA  
GO:0050661 [list] [network] NADP binding  (72 genes)  IEA  
Protein XP_002314474.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 7,  cyto 2  (predict for XP_002314474.1)
Subcellular
localization
TargetP
chlo 4,  scret 4  (predict for XP_002314474.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7475389

.
ppo-r.4
for
7475389

.
ppo-m.4
for
7475389

.
ppo-u.5
for
7473892

.
gma-u.5
for
100811217

.
mtr-u.5
for
112419533

.
ath-u.5
for
MEE32

.
vvi-u.5
for
100243536

.
vvi-u.5
for
100248678

.
vvi-u.5
for
100242676

.
sly-u.5
for
543548

.
osa-u.5
for
4352411

.
osa-u.5
for
4325446

.
osa-u.5
for
4325444

.
zma-u.5
for
100191894

.
zma-u.5
for
100285997

.
zma-u.5
for
100272333

.


Ortholog ID: 3448
Species ath sly osa osa zma zma bra bra vvi vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol MEE32 LOC543548 LOC4325444 LOC4325446 LOC100285997 LOC100191894 LOC103854474 LOC103859154 LOC100243536 LOC100248678 LOC7475389 LOC7473892 LOC112419533 LOC123069867 LOC123110831 LOC123443649 LOC123399365 LOC107936270 LOC107888918 LOC106388835 LOC106389628 CHLRE_08g380201v5 LOC8067235 LOC8067236 LOC107060402 DD LOC102617624 LOC100830448 LOC100842743 LOC107791190 LOC107767464
Function* dehydroquinate dehydratase, putative / shikimate dehydrogenase dehydroquinate dehydratase/shikimate:NADP oxidoreductase bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic uncharacterized LOC100285997 shikimate dehydrogenase 1 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic uncharacterized protein bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like dehydroquinate dehydratase bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ath00940 Phenylpropanoid biosynthesis 5
ath01200 Carbon metabolism 4
ath00030 Pentose phosphate pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 8
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
sly01200 Carbon metabolism 5
sly00010 Glycolysis / Gluconeogenesis 3
sly00020 Citrate cycle (TCA cycle) 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 11
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
osa01200 Carbon metabolism 5
osa00940 Phenylpropanoid biosynthesis 3
osa00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 11
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
zma01200 Carbon metabolism 6
zma00999 Biosynthesis of various plant secondary metabolites 2
zma00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01230 Biosynthesis of amino acids 9
zma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
zma00350 Tyrosine metabolism 3
zma01200 Carbon metabolism 2
zma00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00592 alpha-Linolenic acid metabolism 3
bra00591 Linoleic acid metabolism 2
bra00999 Biosynthesis of various plant secondary metabolites 2
bra00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 14
bra00400 Phenylalanine, tyrosine and tryptophan biosynthesis 12
bra00940 Phenylpropanoid biosynthesis 4
bra00999 Biosynthesis of various plant secondary metabolites 4
bra01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 12
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
vvi01200 Carbon metabolism 3
vvi00010 Glycolysis / Gluconeogenesis 3
vvi00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ppo01230 Biosynthesis of amino acids 4
ppo00071 Fatty acid degradation 3
ppo00350 Tyrosine metabolism 2
ppo00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 8
ppo01200 Carbon metabolism 5
ppo00010 Glycolysis / Gluconeogenesis 4
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
ppo00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 3
mtr03050 Proteasome 3
mtr01230 Biosynthesis of amino acids 2
mtr00020 Citrate cycle (TCA cycle) 2
mtr00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
tae00999 Biosynthesis of various plant secondary metabolites 3
tae01230 Biosynthesis of amino acids 3
tae00020 Citrate cycle (TCA cycle) 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 11
tae01230 Biosynthesis of amino acids 11
tae01240 Biosynthesis of cofactors 4
tae00790 Folate biosynthesis 3
tae00999 Biosynthesis of various plant secondary metabolites 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 2
hvu00520 Amino sugar and nucleotide sugar metabolism 2
hvu01250 Biosynthesis of nucleotide sugars 2
hvu00999 Biosynthesis of various plant secondary metabolites 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00220 Arginine biosynthesis 2
ghi00230 Purine metabolism 2
ghi00780 Biotin metabolism 2
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00941 Flavonoid biosynthesis 8
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi00999 Biosynthesis of various plant secondary metabolites 2
ghi01230 Biosynthesis of amino acids 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna00999 Biosynthesis of various plant secondary metabolites 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bna00999 Biosynthesis of various plant secondary metabolites 6
bna01230 Biosynthesis of amino acids 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
cre01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 10
sbi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 9
sbi00350 Tyrosine metabolism 3
sbi01200 Carbon metabolism 2
sbi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04120 Ubiquitin mediated proteolysis 2
sbi04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 11
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
sot00999 Biosynthesis of various plant secondary metabolites 2
sot00230 Purine metabolism 2
sot00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01230 Biosynthesis of amino acids 11
sot00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
sot00999 Biosynthesis of various plant secondary metabolites 2
sot00230 Purine metabolism 2
sot00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00940 Phenylpropanoid biosynthesis 7
cit00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
cit01230 Biosynthesis of amino acids 4
cit00941 Flavonoid biosynthesis 3
cit00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 7
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
bdi01200 Carbon metabolism 3
bdi00030 Pentose phosphate pathway 2
bdi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 11
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
bdi01200 Carbon metabolism 6
bdi00030 Pentose phosphate pathway 4
bdi00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 5
nta00999 Biosynthesis of various plant secondary metabolites 5
nta01230 Biosynthesis of amino acids 5
nta04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
nta00999 Biosynthesis of various plant secondary metabolites 4
nta01230 Biosynthesis of amino acids 4
nta04626 Plant-pathogen interaction 3
nta04145 Phagosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 819809 543548 4325444 4325446 100285997 100191894 103854474 103859154 100243536 100248678 7475389 7473892 112419533 123069867 123110831 123443649 123399365 107936270 107888918 106388835 106389628 5719875 8067235 8067236 107060402 102577865 102617624 100830448 100842743 107791190 107767464
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