ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-u.5	7476802	uncharacterized LOC7476802
ppo-r.4	7476802	uncharacterized LOC7476802
ppo-u.5	7461331	uncharacterized LOC7461331
ppo-u.5	18100755	uncharacterized LOC18100755
ppo-u.5	7476672	uncharacterized LOC7476672
gma-u.5	100811524	uncharacterized LOC100811524
gma-u.5	100803746	uncharacterized LOC100803746
mtr-u.5	120579462	uncharacterized LOC120579462
mtr-u.5	11425686	uncharacterized LOC11425686
ath-u.5	AT2G24530	transcriptional regulator of RNA polII, SAGA, subunit
ath-u.5	AT4G31440	transcriptional regulator of RNA polII, SAGA, subunit
bra-r.6	103851844	uncharacterized LOC103851844
bra-r.6	103842250	uncharacterized LOC103842250
vvi-u.5	104880381	uncharacterized LOC104880381
vvi-u.5	100852560	uncharacterized LOC100852560
ghi-r.1	107958329	uncharacterized LOC107958329
ghi-r.1	107932990	uncharacterized LOC107932990
ghi-r.1	107906774	uncharacterized LOC107906774
bna-r.1	106375418	uncharacterized LOC106375418
cit-r.1	102628352	uncharacterized LOC102628352
cit-r.1	107174604	uncharacterized LOC107174604
sly-u.5	101254809	uncharacterized LOC101254809
sly-u.5	101249541	uncharacterized LOC101249541
sot-r.1	102594722	uncharacterized LOC102594722
sot-r.1	102582380	uncharacterized LOC102582380
nta-r.1	107810449	uncharacterized LOC107810449
nta-r.1	107809335	uncharacterized LOC107809335
nta-r.1	107792395	uncharacterized LOC107792395
osa-u.5	4337266	uncharacterized LOC4337266
zma-u.5	100275576	uncharacterized LOC100275576
zma-u.5	103645818	uncharacterized LOC103645818
tae-r.2	123190691	uncharacterized LOC123190691
tae-r.2	123054849	uncharacterized LOC123054849
tae-r.2	123047017	uncharacterized LOC123047017
hvu-r.1	123428071	uncharacterized LOC123428071
sbi-r.1	8070257	uncharacterized LOC8070257
bdi-r.1	100844231	uncharacterized LOC100844231

Annotation

functional annotation

KEGG

GO BP

GO:0006357 [list] [network] regulation of transcription by RNA polymerase II

(481 genes)

IEA

GO CC

GO:0000124 [list] [network] SAGA complex

(24 genes)

IEA

GO MF

GO:0003713 [list] [network] transcription coactivator activity

(49 genes)

IEA

Protein

XP_002297698.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cysk 2, chlo 1, cyto 1, golg_plas 1

(predict for XP_002297698.2)

Subcellular
localization
TargetP

other 8, mito 3

(predict for XP_002297698.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7476802	ppo-r.4 for 7476802	ppo-u.5 for 7461331	ppo-u.5 for 18100755	ppo-u.5 for 7476672	gma-u.5 for 100811524	gma-u.5 for 100803746	mtr-u.5 for 120579462	mtr-u.5 for 11425686	ath-u.5 for AT2G24530	ath-u.5 for AT4G31440	bra-r.6 for 103851844	bra-r.6 for 103842250	vvi-u.5 for 104880381	vvi-u.5 for 100852560	ghi-r.1 for 107958329	ghi-r.1 for 107932990	ghi-r.1 for 107906774	bna-r.1 for 106375418	cit-r.1 for 102628352	cit-r.1 for 107174604	sly-u.5 for 101254809	sly-u.5 for 101249541	sot-r.1 for 102594722	sot-r.1 for 102582380	nta-r.1 for 107810449	nta-r.1 for 107809335	nta-r.1 for 107792395	osa-u.5 for 4337266	zma-u.5 for 100275576	zma-u.5 for 103645818	tae-r.2 for 123190691	tae-r.2 for 123054849	tae-r.2 for 123047017	hvu-r.1 for 123428071	sbi-r.1 for 8070257	bdi-r.1 for 100844231

Ortholog

Ortholog ID: 3201

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC7476802

uncharacterized LOC18100755

uncharacterized LOC7476672

uncharacterized LOC100811524

uncharacterized LOC100803746

uncharacterized LOC120579462

uncharacterized LOC11425686

transcriptional regulator of RNA polII, SAGA, subunit

uncharacterized LOC103851844

uncharacterized LOC103842250

uncharacterized LOC104880381

uncharacterized LOC100852560

uncharacterized LOC107958329

uncharacterized LOC107932990

uncharacterized LOC107902018

uncharacterized BNAC03G67600D

uncharacterized LOC102628352

uncharacterized LOC107174604

uncharacterized LOC101254809

uncharacterized LOC101249541

uncharacterized LOC102594722

uncharacterized LOC102582380

uncharacterized LOC107809335

uncharacterized LOC107792395

uncharacterized LOC107815264

uncharacterized LOC4337266

uncharacterized LOC100275576

uncharacterized LOC103645818

uncharacterized LOC123190691

uncharacterized LOC123054849

uncharacterized LOC123047017

uncharacterized LOC123428071

uncharacterized LOC8070257

uncharacterized LOC100844231

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00520	Amino sugar and nucleotide sugar metabolism	3
ath03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	2
bra03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03083	Polycomb repressive complex	3
bra03250	Viral life cycle - HIV-1	3
bra03040	Spliceosome	2
bra03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03082	ATP-dependent chromatin remodeling	2
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03083	Polycomb repressive complex	2
ghi00270	Cysteine and methionine metabolism	2
ghi01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	5
sot00195	Photosynthesis	3
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03040	Spliceosome	2
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2
nta04070	Phosphatidylinositol signaling system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03022	Basal transcription factors	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04120	Ubiquitin mediated proteolysis	2

Expression

Expression pattern

Entrez Gene ID^*

7476802

18100755

7476672

100811524

100803746

120579462

11425686

816989

829271

103851844

103842250

104880381

100852560

107958329

107932990

107902018

106390045

102628352

107174604

101254809

101249541

102594722

102582380

107809335

107792395

107815264

4337266

100275576

103645818

123190691

123054849

123047017

123428071

8070257

100844231

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7476802 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7476802 (ppo-u.5 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	5	2	2	2	2	2	3	1	2	2	2	3	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7476802 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7476802 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**