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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7476818   transcription termination factor MTERF8, chloroplastic 
 ppo-r.4   7476818   transcription termination factor MTERF8, chloroplastic 
 ppo-m.4   7476818   transcription termination factor MTERF8, chloroplastic 
 ppo-u.5   7455789   transcription termination factor MTERF5, chloroplastic 
 ppo-u.5   7476812   uncharacterized LOC7476812 
 ppo-u.5   7463617   transcription termination factor MTERF8, chloroplastic 
 gma-u.5   100806920   transcription termination factor MTERF15, mitochondrial 
 gma-u.5   100813396   transcription termination factor MTERF15, mitochondrial 
 gma-u.5   106799612   uncharacterized LOC106799612 
 mtr-u.5   25488108   uncharacterized LOC25488108 
 mtr-u.5   25501781   transcription termination factor MTERF5, chloroplastic 
 mtr-u.5   25494089   uncharacterized LOC25494089 
 ath-u.5   AT5G07900   Mitochondrial transcription termination factor family protein 
 ath-u.5   AT5G64950   Mitochondrial transcription termination factor family protein 
 ath-u.5   AT1G21150   Mitochondrial transcription termination factor family protein 
 vvi-u.5   100257952   transcription termination factor MTERF5, chloroplastic 
 vvi-u.5   100256384   transcription termination factor MTERF5, chloroplastic 
 sly-u.5   104647140   transcription termination factor MTERF5, chloroplastic-like 
 sly-u.5   101255083   transcription termination factor MTERF5, chloroplastic-like 
 sly-u.5   101268097   transcription termination factor MTERF6, chloroplastic/mitochondrial 
 osa-u.5   9266609   transcription termination factor MTERF4, chloroplastic 
 osa-u.5   9267605   transcription termination factor MTERF8, chloroplastic 
 zma-u.5   100279611   uncharacterized LOC100279611 
 zma-u.5   100217134   uncharacterized LOC100217134 
 zma-u.5   100194019   uncharacterized LOC100194019 

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Top 50 coexpressed genes to 7476818 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7476818 (ppo-u.5 coexpression data)

CoexMap"7476818"


ppoLOC7476818 | Entrez gene ID : 7476818    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 6 3 3 3 2 3 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009658 [list] [network] chloroplast organization  (99 genes)  IEA  
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1948 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
GO:0003690 [list] [network] double-stranded DNA binding  (569 genes)  IEA  
Protein XP_024447599.2 [sequence] [blastp]
XP_052303071.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 4  (predict for XP_024447599.2)
chlo 6,  cyto 2,  mito 2  (predict for XP_052303071.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_024447599.2)
mito 3  (predict for XP_052303071.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7476818

.
ppo-r.4
for
7476818

.
ppo-m.4
for
7476818

.
ppo-u.5
for
7455789

.
ppo-u.5
for
7476812

.
ppo-u.5
for
7463617

.
gma-u.5
for
100806920

.
gma-u.5
for
100813396

.
gma-u.5
for
106799612

.
mtr-u.5
for
25488108

.
mtr-u.5
for
25501781

.
mtr-u.5
for
25494089

.
ath-u.5
for
AT5G07900

.
ath-u.5
for
AT5G64950

.
ath-u.5
for
AT1G21150

.
vvi-u.5
for
100257952

.
vvi-u.5
for
100256384

.
sly-u.5
for
104647140

.
sly-u.5
for
101255083

.
sly-u.5
for
101268097

.
osa-u.5
for
9266609

.
osa-u.5
for
9267605

.
zma-u.5
for
100279611

.
zma-u.5
for
100217134

.
zma-u.5
for
100194019

.


Ortholog ID: 37
Species ath ath gma gma sly sly osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna sbi sbi sot sot cit cit bdi nta nta
Symbol AT5G64950 AT1G21150 LOC100806920 LOC106796317 LOC101258025 LOC101267803 LOC4343048 LOC100284682 LOC100193811 LOC103858260 LOC103862768 LOC100258309 LOC100241175 LOC18111233 LOC18094344 LOC11422280 LOC25494089 LOC123145472 LOC123080704 LOC123401732 LOC123411721 LOC107931417 LOC107916058 BNAC03G44350D LOC106365769 LOC8057353 LOC8062993 LOC102588163 LOC102589966 LOC127900674 LOC102622219 LOC100840205 LOC107777294 LOC107759636
Function* Mitochondrial transcription termination factor family protein Mitochondrial transcription termination factor family protein transcription termination factor MTERF15, mitochondrial uncharacterized LOC106796317 transcription termination factor MTERF9, chloroplastic uncharacterized LOC101267803 transcription termination factor MTERF2, chloroplastic uncharacterized LOC100284682 uncharacterized LOC100193811 transcription termination factor MTERF8, chloroplastic uncharacterized LOC103862768 transcription termination factor MTERF15, mitochondrial transcription termination factor MTERF9, chloroplastic-like uncharacterized LOC18111233 transcription termination factor MTERF9, chloroplastic uncharacterized LOC11422280 uncharacterized LOC25494089 uncharacterized LOC123145472 uncharacterized LOC123080704 transcription termination factor MTERF8, chloroplastic-like uncharacterized LOC123411721 uncharacterized LOC107931417 transcription termination factor MTERF6, chloroplastic/mitochondrial transcription termination factor MTERF8, chloroplastic transcription termination factor MTERF4, chloroplastic-like transcription termination factor MTEF1, chloroplastic uncharacterized LOC8062993 uncharacterized LOC102588163 uncharacterized LOC102589966 transcription termination factor MTERF15, mitochondrial-like uncharacterized LOC102622219 uncharacterized LOC100840205 transcription termination factor MTERF15, mitochondrial-like transcription termination factor MTERF8, chloroplastic-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 3
ppo00190 Oxidative phosphorylation 2
ppo01200 Carbon metabolism 2
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00510 N-Glycan biosynthesis 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 4
ghi03250 Viral life cycle - HIV-1 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 10
ghi00860 Porphyrin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 2
bna00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03022 Basal transcription factors 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot00280 Valine, leucine and isoleucine degradation 2
sot00270 Cysteine and methionine metabolism 2
sot00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 4
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 836619 838711 100806920 106796317 101258025 101267803 4343048 100284682 100193811 103858260 103862768 100258309 100241175 18111233 18094344 11422280 25494089 123145472 123080704 123401732 123411721 107931417 107916058 106434119 106365769 8057353 8062993 102588163 102589966 127900674 102622219 100840205 107777294 107759636
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