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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7476837   uncharacterized LOC7476837 
 ppo-r.4   7476837   uncharacterized LOC7476837 
 ppo-m.4   7476837   uncharacterized LOC7476837 
 ppo-u.5   7460254   uncharacterized LOC7460254 
 gma-u.5   100811151   uncharacterized LOC100811151 
 gma-u.5   100780340   uncharacterized LOC100780340 
 mtr-u.5   112417214   3'-5' exoribonuclease 1 
 vvi-u.5   100263388   uncharacterized LOC100263388 
 vvi-u.5   100853630   3'-5' exonuclease eri1 
 sly-u.5   101244615   exonuclease family protein 
 osa-u.5   4326908   3'-5' exoribonuclease 1 
 osa-u.5   4326611   uncharacterized LOC4326611 
 zma-u.5   100280343   uncharacterized LOC100280343 

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Top 50 coexpressed genes to 7476837 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7476837 (ppo-u.5 coexpression data)

CoexMap"7476837"


ppoLOC7476837 | Entrez gene ID : 7476837    
Species ppo gma mtr vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae ath bna ghi
Paralog 4 2 1 2 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000467 [list] [network] exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)  (14 genes)  IEA  
GO CC
GO MF
GO:0000175 [list] [network] 3'-5'-RNA exonuclease activity  (43 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4002 genes)  IEA  
Protein XP_002299190.1 [sequence] [blastp]
XP_006368641.1 [sequence] [blastp]
XP_052312709.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3,  cysk_nucl 3  (predict for XP_002299190.1)
nucl 6,  cyto 3,  cysk_nucl 3  (predict for XP_006368641.1)
nucl 6,  cyto 3,  cysk_nucl 3  (predict for XP_052312709.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002299190.1)
other 8  (predict for XP_006368641.1)
other 8  (predict for XP_052312709.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7476837

.
ppo-r.4
for
7476837

.
ppo-m.4
for
7476837

.
ppo-u.5
for
7460254

.
gma-u.5
for
100811151

.
gma-u.5
for
100780340

.
mtr-u.5
for
112417214

.
vvi-u.5
for
100263388

.
vvi-u.5
for
100853630

.
sly-u.5
for
101244615

.
osa-u.5
for
4326908

.
osa-u.5
for
4326611

.
zma-u.5
for
100280343

.


Ortholog ID: 2057
Species gma gma sly osa zma vvi vvi ppo ppo mtr tae tae hvu ghi ghi cre sbi sbi sot bdi bdi nta nta
Symbol LOC100780340 LOC100811151 LOC101244615 LOC4326611 LOC100280343 LOC100853630 LOC100263388 LOC7476837 LOC7460254 LOC112417214 LOC123069718 LOC123077921 LOC123443312 LOC107928109 LOC121207621 CHLRE_01g033950v5 LOC8078116 LOC8086059 LOC102588682 LOC100840707 LOC100822635 LOC107832708 LOC107828685
Function* uncharacterized LOC100780340 uncharacterized LOC100811151 exonuclease family protein uncharacterized LOC4326611 uncharacterized LOC100280343 3'-5' exonuclease eri1 uncharacterized LOC100263388 uncharacterized LOC7476837 uncharacterized LOC7460254 3'-5' exoribonuclease 1 ERI1 exoribonuclease 2 ERI1 exoribonuclease 2-like ERI1 exoribonuclease 2-like 3'-5' exoribonuclease 1 ERI1 exoribonuclease 2 uncharacterized protein uncharacterized LOC8078116 ERI1 exoribonuclease 2 3'-5' exoribonuclease 1-like ERI1 exoribonuclease 2 ERI1 exoribonuclease 2 uncharacterized LOC107832708 uncharacterized LOC107828685
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 3
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
gma04141 Protein processing in endoplasmic reticulum 2
gma04130 SNARE interactions in vesicular transport 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 7
vvi00195 Photosynthesis 2
vvi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00561 Glycerolipid metabolism 2
ppo00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 3
mtr00010 Glycolysis / Gluconeogenesis 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00520 Amino sugar and nucleotide sugar metabolism 3
ghi01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00520 Amino sugar and nucleotide sugar metabolism 3
ghi01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00071 Fatty acid degradation 2
bdi00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100780340 100811151 101244615 4326611 100280343 100853630 100263388 7476837 7460254 112417214 123069718 123077921 123443312 107928109 121207621 5715431 8078116 8086059 102588682 100840707 100822635 107832708 107828685
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