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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7477131   DNA-directed RNA polymerase II subunit 4 
 ppo-r.4   7477131   DNA-directed RNA polymerase II subunit 4 
 ppo-u.5   7456265   DNA-directed RNA polymerase II subunit 4 
 ppo-u.5   18105995   DNA-directed RNA polymerases IV and V subunit 4 
 gma-u.5   100809792   DNA-directed RNA polymerases IV and V subunit 4 
 gma-u.5   100775535   DNA-directed RNA polymerases IV and V subunit 4 
 gma-u.5   100527704   DNA-directed RNA polymerase II subunit RPB4 
 mtr-u.5   11416659   DNA-directed RNA polymerases IV and V subunit 4 
 mtr-u.5   11418894   DNA-directed RNA polymerase II subunit 4 
 ath-u.5   NRPB4   RNA polymerase II, Rpb4, core protein 
 vvi-u.5   100245383   DNA-directed RNA polymerase II subunit 4 
 vvi-u.5   100246461   DNA-directed RNA polymerases IV and V subunit 4 
 sly-u.5   101264016   DNA-directed RNA polymerase II subunit 4 
 sly-u.5   101254374   DNA-directed RNA polymerases IV and V subunit 4 
 osa-u.5   4328083   DNA-directed RNA polymerase II subunit 4 
 osa-u.5   4330570   DNA-directed RNA polymerase II subunit 4 
 zma-u.5   100191330   uncharacterized LOC100191330 
 zma-u.5   100282338   DNA-directed RNA polymerase II 16 kDa polypeptide 

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Top 50 coexpressed genes to 7477131 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7477131 (ppo-u.5 coexpression data)

CoexMap"7477131"


ppoLOC7477131 | Entrez gene ID : 7477131    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 2 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03020 [list] [network] RNA polymerase (53 genes)
pop03420 [list] [network] Nucleotide excision repair (89 genes)
GO BP
GO:0031990 [list] [network] mRNA export from nucleus in response to heat stress  (2 genes)  IEA  
GO:0045948 [list] [network] positive regulation of translational initiation  (3 genes)  IEA  
GO:0000288 [list] [network] nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay  (21 genes)  IEA  
GO:0006367 [list] [network] transcription initiation at RNA polymerase II promoter  (36 genes)  IEA  
GO CC
GO:0005665 [list] [network] RNA polymerase II, core complex  (23 genes)  IEA  
GO:0000932 [list] [network] P-body  (59 genes)  IEA  
GO MF
GO:0031369 [list] [network] translation initiation factor binding  (16 genes)  IEA  
GO:0000166 [list] [network] nucleotide binding  (3486 genes)  IEA  
Protein XP_024456613.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 2,  extr 1,  cysk 1  (predict for XP_024456613.1)
Subcellular
localization
TargetP
other 8  (predict for XP_024456613.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7477131

.
ppo-r.4
for
7477131

.
ppo-u.5
for
7456265

.
ppo-u.5
for
18105995

.
gma-u.5
for
100809792

.
gma-u.5
for
100775535

.
gma-u.5
for
100527704

.
mtr-u.5
for
11416659

.
mtr-u.5
for
11418894

.
ath-u.5
for
NRPB4

.
vvi-u.5
for
100245383

.
vvi-u.5
for
100246461

.
sly-u.5
for
101264016

.
sly-u.5
for
101254374

.
osa-u.5
for
4328083

.
osa-u.5
for
4330570

.
zma-u.5
for
100191330

.
zma-u.5
for
100282338

.


Ortholog ID: 1673
Species ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sbi cit cit bdi bdi nta nta
Symbol NRPB4 LOC100809792 LOC100527704 LOC101264016 LOC101254374 LOC4330570 LOC4328083 LOC100191330 LOC100282338 LOC103850351 LOC103832764 LOC100245383 LOC100246461 LOC7456265 LOC7477131 LOC11418894 LOC11416659 LOC123138075 LOC123138076 LOC123401259 LOC123401898 LOC107962112 LOC107928418 LOC106430480 LOC106384918 CHLRE_07g313185v5 LOC110434981 LOC8085204 LOC102623007 LOC102621370 LOC100843177 LOC104583855 LOC107819564 LOC107788077
Function* RNA polymerase II, Rpb4, core protein DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit RPB4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 uncharacterized LOC100191330 DNA-directed RNA polymerase II 16 kDa polypeptide DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4-like DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 uncharacterized protein DNA-directed RNA polymerases IV and V subunit 4-like DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerases IV and V subunit 4 DNA-directed RNA polymerase II subunit 4 DNA-directed RNA polymerase II subunit 4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 5
ath03020 RNA polymerase 4
ath03420 Nucleotide excision repair 4
ath03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
gma03420 Nucleotide excision repair 3
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 8
gma03020 RNA polymerase 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly00190 Oxidative phosphorylation 4
sly03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly03040 Spliceosome 2
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 6
osa03020 RNA polymerase 3
osa03420 Nucleotide excision repair 3
osa00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03020 RNA polymerase 4
osa03420 Nucleotide excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03082 ATP-dependent chromatin remodeling 4
zma03420 Nucleotide excision repair 3
zma03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 3
zma03083 Polycomb repressive complex 3
zma04120 Ubiquitin mediated proteolysis 3
zma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03020 RNA polymerase 3
vvi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 4
ppo04120 Ubiquitin mediated proteolysis 3
ppo04144 Endocytosis 3
ppo04145 Phagosome 3
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 3
mtr03420 Nucleotide excision repair 3
mtr03050 Proteasome 2
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03420 Nucleotide excision repair 4
mtr03020 RNA polymerase 3
mtr03040 Spliceosome 3
mtr03010 Ribosome 3
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00904 Diterpenoid biosynthesis 3
tae04075 Plant hormone signal transduction 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04075 Plant hormone signal transduction 4
tae00904 Diterpenoid biosynthesis 3
tae03020 RNA polymerase 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04120 Ubiquitin mediated proteolysis 2
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03020 RNA polymerase 2
hvu03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 2
ghi03420 Nucleotide excision repair 2
ghi00240 Pyrimidine metabolism 2
ghi01232 Nucleotide metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03020 RNA polymerase 4
ghi03420 Nucleotide excision repair 4
ghi03050 Proteasome 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 3
bna03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 5
cre03020 RNA polymerase 4
cre03420 Nucleotide excision repair 4
cre03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03083 Polycomb repressive complex 3
sbi04120 Ubiquitin mediated proteolysis 3
sbi04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00510 N-Glycan biosynthesis 2
cit00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04136 Autophagy - other 2
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03083 Polycomb repressive complex 4
bdi04120 Ubiquitin mediated proteolysis 4
bdi04141 Protein processing in endoplasmic reticulum 4
bdi03040 Spliceosome 2
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03020 RNA polymerase 5
bdi03420 Nucleotide excision repair 3
bdi03040 Spliceosome 3
bdi03015 mRNA surveillance pathway 3
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03018 RNA degradation 4
nta04142 Lysosome 2
nta03040 Spliceosome 2
nta03020 RNA polymerase 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 4
nta03420 Nucleotide excision repair 4
nta03050 Proteasome 2
nta04120 Ubiquitin mediated proteolysis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830853 100809792 100527704 101264016 101254374 4330570 4328083 100191330 100282338 103850351 103832764 100245383 100246461 7456265 7477131 11418894 11416659 123138075 123138076 123401259 123401898 107962112 107928418 106430480 106384918 5726332 110434981 8085204 102623007 102621370 100843177 104583855 107819564 107788077
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