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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7477758   uncharacterized LOC7477758 
 ppo-r.4   7477758   uncharacterized LOC7477758 
 ppo-u.5   112323229   uncharacterized LOC112323229 
 gma-u.5   100784412   elongation factor 1-alpha 
 gma-u.5   100793653   elongation factor 1-alpha 
 mtr-u.5   11409629   eukaryotic peptide chain release factor GTP-binding subunit ERF3A 
 mtr-u.5   25496771   eukaryotic peptide chain release factor GTP-binding subunit 
 ath-u.5   AT1G18070   Translation elongation factor EF1A/initiation factor IF2gamma family protein 
 vvi-u.5   100249117   uncharacterized LOC100249117 
 sly-u.5   101244963   uncharacterized LOC101244963 
 osa-u.5   4329282   uncharacterized LOC4329282 
 osa-u.5   4335338   uncharacterized LOC4335338 
 zma-u.5   103646667   eukaryotic peptide chain release factor GTP-binding subunit ERF3A 
 zma-u.5   100384492   eukaryotic peptide chain release factor GTP-binding subunit ERF3A 

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Top 50 coexpressed genes to 7477758 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7477758 (ppo-u.5 coexpression data)

CoexMap"7477758"


ppoLOC7477758 | Entrez gene ID : 7477758    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 2 1 1 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03015 [list] [network] mRNA surveillance pathway (164 genes)
GO BP
GO:0006412 [list] [network] translation  (598 genes)  IEA  
GO CC
GO:0018444 [list] [network] translation release factor complex  (6 genes)  IEA  
GO MF
GO:0003747 [list] [network] translation release factor activity  (14 genes)  IEA  
GO:0003924 [list] [network] GTPase activity  (264 genes)  IEA  
GO:0005525 [list] [network] GTP binding  (290 genes)  IEA  
Protein XP_002319868.2 [sequence] [blastp]
XP_024439795.1 [sequence] [blastp]
XP_024439796.1 [sequence] [blastp]
XP_024439797.1 [sequence] [blastp]
XP_024439798.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 3,  cyto_nucl 3  (predict for XP_002319868.2)
cyto 4,  chlo 2,  nucl 2,  cyto_pero 2,  cyto_E.R. 2,  cyto_plas 2  (predict for XP_024439795.1)
cyto 4,  chlo 3,  nucl 1,  mito 1  (predict for XP_024439796.1)
cyto 4,  chlo 3,  nucl 1,  mito 1  (predict for XP_024439797.1)
cyto 5,  nucl 3,  cysk 1,  nucl_plas 1  (predict for XP_024439798.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002319868.2)
other 8  (predict for XP_024439795.1)
mito 6,  other 3  (predict for XP_024439796.1)
mito 6,  other 3  (predict for XP_024439797.1)
other 9  (predict for XP_024439798.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7477758

.
ppo-r.4
for
7477758

.
ppo-u.5
for
112323229

.
gma-u.5
for
100784412

.
gma-u.5
for
100793653

.
mtr-u.5
for
11409629

.
mtr-u.5
for
25496771

.
ath-u.5
for
AT1G18070

.
vvi-u.5
for
100249117

.
sly-u.5
for
101244963

.
osa-u.5
for
4329282

.
osa-u.5
for
4335338

.
zma-u.5
for
103646667

.
zma-u.5
for
100384492

.


Ortholog ID: 4820
Species ath gma gma sly osa osa zma zma bra bra vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot sot cit bdi bdi nta nta
Symbol AT1G18070 LOC100784412 LOC100793653 LOC101244963 LOC4329282 LOC4335338 LOC103646667 LOC100384492 LOC103835924 LOC103872579 LOC100249117 LOC112323229 LOC7477758 LOC25496771 LOC11409629 LOC100125704 LOC123051331 LOC123424567 LOC107898132 LOC107890842 LOC106359300 LOC106369044 CHLRE_06g284750v5 LOC8069429 LOC8081781 LOC102605140 LOC102584824 LOC102608389 LOC100835861 LOC100841181 LOC107797412 LOC107781036
Function* Translation elongation factor EF1A/initiation factor IF2gamma family protein elongation factor 1-alpha elongation factor 1-alpha uncharacterized LOC101244963 uncharacterized LOC4329282 uncharacterized LOC4335338 eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like eukaryotic peptide chain release factor GTP-binding subunit ERF3A uncharacterized LOC100249117 uncharacterized LOC112323229 uncharacterized LOC7477758 eukaryotic peptide chain release factor GTP-binding subunit eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A uncharacterized protein eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like uncharacterized LOC102608389 eukaryotic peptide chain release factor GTP-binding subunit ERF3A eukaryotic peptide chain release factor GTP-binding subunit ERF3A uncharacterized LOC107797412 uncharacterized LOC107781036
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03015 mRNA surveillance pathway 3
ath03013 Nucleocytoplasmic transport 2
ath03040 Spliceosome 2
ath03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma03015 mRNA surveillance pathway 4
gma03013 Nucleocytoplasmic transport 3
gma00010 Glycolysis / Gluconeogenesis 2
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 6
gma03015 mRNA surveillance pathway 3
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03083 Polycomb repressive complex 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
osa03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 3
zma00970 Aminoacyl-tRNA biosynthesis 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00970 Aminoacyl-tRNA biosynthesis 9
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo00190 Oxidative phosphorylation 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 4
ppo04145 Phagosome 4
ppo04142 Lysosome 2
ppo04517 IgSF CAM signaling 2
ppo04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr00330 Arginine and proline metabolism 3
mtr04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi03083 Polycomb repressive complex 2
sbi04144 Endocytosis 2
sbi03050 Proteasome 2
sbi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 3
sbi04120 Ubiquitin mediated proteolysis 2
sbi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03015 mRNA surveillance pathway 2
sot03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
bdi03015 mRNA surveillance pathway 2
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838387 100784412 100793653 101244963 4329282 4335338 103646667 100384492 103835924 103872579 100249117 112323229 7477758 25496771 11409629 100125704 123051331 123424567 107898132 107890842 106359300 106369044 5720986 8069429 8081781 102605140 102584824 102608389 100835861 100841181 107797412 107781036
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