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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7477840   probable E3 ubiquitin-protein ligase RHA4A 
 ppo-r.4   7477840   probable E3 ubiquitin-protein ligase RHA4A 
 ppo-m.4   7477840   probable E3 ubiquitin-protein ligase RHA4A 
 ppo-u.5   7497866   probable E3 ubiquitin-protein ligase RHA4A 
 gma-u.5   100806499   probable E3 ubiquitin-protein ligase RHA4A 
 mtr-u.5   25489610   probable E3 ubiquitin-protein ligase RHA4A 
 ath-u.5   AT4G24015   RING/U-box superfamily protein 
 vvi-u.5   100266728   probable E3 ubiquitin-protein ligase RHA4A 
 sly-u.5   101250143   probable E3 ubiquitin-protein ligase RHA4A 

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Top 50 coexpressed genes to 7477840 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7477840 (ppo-u.5 coexpression data)

CoexMap"7477840"


ppoLOC7477840 | Entrez gene ID : 7477840    
Species ppo gma mtr ath vvi sly sbi nta bra osa cre cit hvu bdi sot zma tae bna ghi
Paralog 4 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0016567 [list] [network] protein ubiquitination  (417 genes)  IEA  
GO CC
GO MF
GO:0016740 [list] [network] transferase activity  (4072 genes)  IEA  
Protein XP_024458529.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 8,  cyto 1  (predict for XP_024458529.2)
Subcellular
localization
TargetP
other 6,  mito 4  (predict for XP_024458529.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7477840

.
ppo-r.4
for
7477840

.
ppo-m.4
for
7477840

.
ppo-u.5
for
7497866

.
gma-u.5
for
100806499

.
mtr-u.5
for
25489610

.
ath-u.5
for
AT4G24015

.
vvi-u.5
for
100266728

.
sly-u.5
for
101250143

.


Ortholog ID: 11536
Species ath gma gma sly bra bra vvi ppo ppo mtr ghi ghi bna bna sot nta nta
Symbol AT4G24015 LOC100813129 LOC100806499 LOC101250143 LOC103861627 LOC108870377 LOC100266728 LOC7477840 LOC7497866 LOC25489610 LOC107909133 LOC107928286 LOC106414116 LOC106376005 LOC102604263 LOC107813388 LOC107797778
Function* RING/U-box superfamily protein probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A probable E3 ubiquitin-protein ligase RHA4A RING-H2 zinc finger protein RHA4a-like putative E3 ubiquitin-protein ligase RHA4A putative E3 ubiquitin-protein ligase RHA4A
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00053 Ascorbate and aldarate metabolism 2
gma00520 Amino sugar and nucleotide sugar metabolism 2
gma01240 Biosynthesis of cofactors 2
gma01250 Biosynthesis of nucleotide sugars 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03083 Polycomb repressive complex 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00280 Valine, leucine and isoleucine degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
bra04075 Plant hormone signal transduction 2
bra00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04075 Plant hormone signal transduction 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
nta04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00562 Inositol phosphate metabolism 2
nta00564 Glycerophospholipid metabolism 2
nta00565 Ether lipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 2745724 100813129 100806499 101250143 103861627 108870377 100266728 7477840 7497866 25489610 107909133 107928286 106414116 106376005 102604263 107813388 107797778
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