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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7478534   protein DAMAGED DNA-BINDING 2 
 ppo-r.4   7478534   protein DAMAGED DNA-BINDING 2 
 ppo-m.4   7478534   protein DAMAGED DNA-BINDING 2 
 gma-u.5   100793506   protein DAMAGED DNA-BINDING 2 
 gma-u.5   100527914   protein DAMAGED DNA-BINDING 2 
 mtr-u.5   11405495   protein DAMAGED DNA-BINDING 2 
 ath-u.5   DDB2   damaged DNA binding 2 
 vvi-u.5   100250121   protein DAMAGED DNA-BINDING 2 
 sly-u.5   101265575   protein DAMAGED DNA-BINDING 2 
 osa-u.5   4325482   DNA damage-binding protein 2-like 
 zma-u.5   100381699   DNA damage-binding protein 2 

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Top 50 coexpressed genes to 7478534 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478534 (ppo-u.5 coexpression data)

CoexMap"7478534"


ppoLOC7478534 | Entrez gene ID : 7478534    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03420 [list] [network] Nucleotide excision repair (89 genes)
pop04120 [list] [network] Ubiquitin mediated proteolysis (184 genes)
GO BP
GO:0009411 [list] [network] response to UV  (13 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (290 genes)  IEA  
GO CC
GO:0080008 [list] [network] Cul4-RING E3 ubiquitin ligase complex  (28 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (35 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002299813.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  mito 3,  cyto_nucl 3,  cysk_nucl 3,  nucl_plas 3  (predict for XP_002299813.3)
Subcellular
localization
TargetP
other 5,  mito 5  (predict for XP_002299813.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7478534

.
ppo-r.4
for
7478534

.
ppo-m.4
for
7478534

.
gma-u.5
for
100793506

.
gma-u.5
for
100527914

.
mtr-u.5
for
11405495

.
ath-u.5
for
DDB2

.
vvi-u.5
for
100250121

.
sly-u.5
for
101265575

.
osa-u.5
for
4325482

.
zma-u.5
for
100381699

.


Ortholog ID: 10409
Species ath gma gma sly osa zma vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol DDB2 LOC100527914 LOC100793506 LOC101265575 LOC4325482 LOC100381699 LOC100250121 LOC7478534 LOC11405495 LOC123060019 LOC123068492 LOC123442607 LOC121212677 LOC107936460 LOC106388037 LOC106387387 CHLRE_13g577550v5 LOC8060824 LOC102582170 LOC102616830 LOC100842647 LOC107759199 LOC107760564
Function* damaged DNA binding 2 protein DAMAGED DNA-BINDING 2 protein DAMAGED DNA-BINDING 2 protein DAMAGED DNA-BINDING 2 DNA damage-binding protein 2-like DNA damage-binding protein 2 protein DAMAGED DNA-BINDING 2 protein DAMAGED DNA-BINDING 2 protein DAMAGED DNA-BINDING 2 DNA damage-binding protein 2 DNA damage-binding protein 2 DNA damage-binding protein 2 protein DAMAGED DNA-BINDING 2 protein DAMAGED DNA-BINDING 2 protein DAMAGED DNA-BINDING 2 protein DAMAGED DNA-BINDING 2 uncharacterized protein DNA damage-binding protein 2 protein DAMAGED DNA-BINDING 2 protein DAMAGED DNA-BINDING 2 DNA damage-binding protein 2 protein DAMAGED DNA-BINDING 2 protein DAMAGED DNA-BINDING 2-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04712 Circadian rhythm - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00750 Vitamin B6 metabolism 2
gma01240 Biosynthesis of cofactors 2
gma03420 Nucleotide excision repair 2
gma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04712 Circadian rhythm - plant 3
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 4
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03420 Nucleotide excision repair 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00650 Butanoate metabolism 2
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
hvu03015 mRNA surveillance pathway 2
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00760 Nicotinate and nicotinamide metabolism 4
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
ghi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04712 Circadian rhythm - plant 4
bna03420 Nucleotide excision repair 2
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi03083 Polycomb repressive complex 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00941 Flavonoid biosynthesis 3
sot03018 RNA degradation 2
sot00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00941 Flavonoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 2
nta03420 Nucleotide excision repair 2
nta04120 Ubiquitin mediated proteolysis 2
nta00770 Pantothenate and CoA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835990 100527914 100793506 101265575 4325482 100381699 100250121 7478534 11405495 123060019 123068492 123442607 121212677 107936460 106388037 106387387 5719263 8060824 102582170 102616830 100842647 107759199 107760564
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