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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7478614   E3 ubiquitin-protein ligase RSL1 
 ppo-r.4   7478614   E3 ubiquitin-protein ligase RSL1 
 ppo-u.5   7487342   E3 ubiquitin-protein ligase RSL1 
 gma-u.5   100790037   uncharacterized LOC100790037 
 gma-u.5   RTRP2   probable E3 ubiquitin-protein ligase rbrA-like protein 
 mtr-u.5   112420731   uncharacterized LOC112420731 
 vvi-u.5   100241711   E3 ubiquitin-protein ligase RSL1 
 sly-u.5   101251588   E3 ubiquitin-protein ligase RSL1-like 
 zma-u.5   100191809   putative RING zinc finger domain superfamily protein 

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Top 50 coexpressed genes to 7478614 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478614 (ppo-u.5 coexpression data)

CoexMap"7478614"


ppoLOC7478614 | Entrez gene ID : 7478614    
Species ppo gma mtr vvi sly zma sbi nta bra osa cre cit hvu bdi sot tae ath bna ghi
Paralog 3 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0032436 [list] [network] positive regulation of proteasomal ubiquitin-dependent protein catabolic process  (38 genes)  IEA  
GO:0000209 [list] [network] protein polyubiquitination  (88 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (340 genes)  IEA  
GO CC
GO:0000151 [list] [network] ubiquitin ligase complex  (189 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0031624 [list] [network] ubiquitin conjugating enzyme binding  (31 genes)  IEA  
GO:0004523 [list] [network] RNA-DNA hybrid ribonuclease activity  (65 genes)  IEA  
GO:0061630 [list] [network] ubiquitin protein ligase activity  (225 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4002 genes)  IEA  
Protein XP_002312890.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 3,  cyto 1,  chlo_mito 1  (predict for XP_002312890.2)
Subcellular
localization
TargetP
other 8  (predict for XP_002312890.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7478614

.
ppo-r.4
for
7478614

.
ppo-u.5
for
7487342

.
gma-u.5
for
100790037

.
gma-u.5
for
RTRP2

.
mtr-u.5
for
112420731

.
vvi-u.5
for
100241711

.
sly-u.5
for
101251588

.
zma-u.5
for
100191809

.


Ortholog ID: 4572
Species gma gma sly zma vvi ppo ppo mtr tae tae hvu hvu ghi bna bna sbi sot sot cit bdi bdi nta nta
Symbol LOC100790037 RTRP2 LOC101251588 LOC100191809 LOC100241711 LOC7478614 LOC7487342 LOC112420731 LOC123111427 LOC123103236 LOC123410985 LOC123399745 LOC107953205 LOC106346498 LOC106347508 LOC8067567 LOC102603567 LOC102602343 LOC102623002 LOC100828328 LOC100830199 LOC107767565 LOC107761949
Function* uncharacterized LOC100790037 probable E3 ubiquitin-protein ligase rbrA-like protein E3 ubiquitin-protein ligase RSL1-like putative RING zinc finger domain superfamily protein E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1 uncharacterized LOC112420731 uncharacterized LOC123111427 uncharacterized LOC123103236 E3 ubiquitin-protein ligase arih1-like uncharacterized LOC123399745 uncharacterized LOC107953205 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1-like uncharacterized LOC8067567 uncharacterized LOC102603567 probable E3 ubiquitin-protein ligase ARI9 E3 ubiquitin-protein ligase RSL1 uncharacterized LOC100828328 uncharacterized LOC100830199 E3 ubiquitin-protein ligase RSL1 E3 ubiquitin-protein ligase RSL1-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 4
gma04626 Plant-pathogen interaction 3
gma04016 MAPK signaling pathway - plant 2
gma04070 Phosphatidylinositol signaling system 2
gma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
vvi04141 Protein processing in endoplasmic reticulum 2
vvi00020 Citrate cycle (TCA cycle) 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
ppo03040 Spliceosome 2
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03420 Nucleotide excision repair 2
tae03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00190 Oxidative phosphorylation 3
ghi04626 Plant-pathogen interaction 2
ghi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100790037 100786163 101251588 100191809 100241711 7478614 7487342 112420731 123111427 123103236 123410985 123399745 107953205 106346498 106347508 8067567 102603567 102602343 102623002 100828328 100830199 107767565 107761949
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