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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7478774   rDNA transcriptional regulator pol5 
 ppo-r.4   7478774   rDNA transcriptional regulator pol5 
 ppo-m.4   7478774   rDNA transcriptional regulator pol5 
 ppo-u.5   7478692   rDNA transcriptional regulator pol5-like 
 gma-u.5   100803141   rDNA transcriptional regulator pol5 
 gma-u.5   100787296   rDNA transcriptional regulator pol5 
 mtr-u.5   11419794   rDNA transcriptional regulator pol5 
 ath-u.5   AT5G64420   DNA polymerase V family 
 vvi-u.5   100268096   rDNA transcriptional regulator pol5 
 sly-u.5   101264560   rDNA transcriptional regulator pol5-like 
 sly-u.5   101264257   rDNA transcriptional regulator pol5-like 
 osa-u.5   4328227   rDNA transcriptional regulator pol5 
 zma-u.5   103626594   uncharacterized LOC103626594 
 zma-u.5   103650372   DNA polymerase V family 

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Top 50 coexpressed genes to 7478774 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7478774 (ppo-u.5 coexpression data)

CoexMap"7478774"


ppoLOC7478774 | Entrez gene ID : 7478774    
Species ppo gma mtr ath vvi sly osa zma hvu bna cit bra ghi sbi bdi nta tae cre sot
Paralog 4 2 1 1 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1948 genes)  IEA  
GO CC
GO:0005730 [list] [network] nucleolus  (220 genes)  IEA  
GO MF
GO:0008134 [list] [network] transcription factor binding  (23 genes)  IEA  
GO:0003677 [list] [network] DNA binding  (2205 genes)  IEA  
Protein XP_002313953.4 [sequence] [blastp]
XP_024464282.2 [sequence] [blastp]
XP_024464283.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 5,  chlo 1,  plas 1,  cyto 1,  cysk 1,  golg 1,  chlo_mito 1,  E.R._plas 1,  mito_plas 1  (predict for XP_002313953.4)
nucl 5,  chlo 1,  plas 1,  cyto 1,  cysk 1,  golg 1,  chlo_mito 1,  E.R._plas 1,  mito_plas 1  (predict for XP_024464282.2)
nucl 5,  chlo 1,  plas 1,  cyto 1,  cysk 1,  golg 1,  chlo_mito 1,  E.R._plas 1,  mito_plas 1  (predict for XP_024464283.2)
Subcellular
localization
TargetP
other 8  (predict for XP_002313953.4)
other 8  (predict for XP_024464282.2)
other 8  (predict for XP_024464283.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7478774
ppo-r.4
for
7478774
ppo-m.4
for
7478774
ppo-u.5
for
7478692
gma-u.5
for
100803141
gma-u.5
for
100787296
mtr-u.5
for
11419794
ath-u.5
for
AT5G64420
vvi-u.5
for
100268096
sly-u.5
for
101264560
sly-u.5
for
101264257
osa-u.5
for
4328227
zma-u.5
for
103626594
zma-u.5
for
103650372


Ortholog ID: 7776
Species ppo ppo gma gma mtr ath bra vvi ghi ghi bna bna cit sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC7478692 LOC7478774 LOC100803141 LOC100787296 LOC11419794 AT5G64420 LOC103873865 LOC100268096 LOC121212244 LOC107894180 LOC106348052 LOC125583561 LOC102615838 LOC101264257 LOC102581880 LOC107810425 LOC107817930 LOC4328227 LOC103650372 LOC103626594 LOC123136136 LOC123132116 LOC123401478 LOC8069941 LOC100832357 CHLRE_01g012350v5
Function* rDNA transcriptional regulator pol5-like rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5 DNA polymerase V family rDNA transcriptional regulator pol5 rDNA transcriptional regulator pol5 myb-binding protein 1A-like protein myb-binding protein 1A-like protein myb-binding protein 1A rDNA transcriptional regulator pol5-like uncharacterized LOC102615838 rDNA transcriptional regulator pol5-like DNA polymerase V uncharacterized LOC107810425 rDNA transcriptional regulator pol5-like rDNA transcriptional regulator pol5 DNA polymerase V family uncharacterized LOC103626594 rDNA transcriptional regulator pol5 myb-binding protein 1A-like protein rDNA transcriptional regulator pol5 myb-binding protein 1A-like protein uncharacterized LOC100832357 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
gma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
ath03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03020 RNA polymerase 4
bna03018 RNA degradation 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03013 Nucleocytoplasmic transport 5
sly00970 Aminoacyl-tRNA biosynthesis 2
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03013 Nucleocytoplasmic transport 4
sot03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 5
zma03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
bdi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7478692 7478774 100803141 100787296 11419794 836563 103873865 100268096 121212244 107894180 106348052 125583561 102615838 101264257 102581880 107810425 107817930 4328227 103650372 103626594 123136136 123132116 123401478 8069941 100832357 5715053
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