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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7479045   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 ppo-r.4   7479045   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 ppo-u.5   18111236   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 ppo-u.5   7469086   arogenate dehydratase 2 
 gma-u.5   100792353   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 gma-u.5   100787759   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 gma-u.5   100787387   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 mtr-u.5   11438633   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 mtr-u.5   11417356   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 mtr-u.5   11412114   arogenate dehydratase 2 
 ath-u.5   ADT2   arogenate dehydratase 2 
 ath-u.5   ADT1   arogenate dehydratase 1 
 vvi-u.5   100265426   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 vvi-u.5   100245164   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 vvi-u.5   100245060   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 sly-u.5   101251350   arogenate dehydratase/prephenate dehydratase 1, chloroplastic 
 sly-u.5   101251252   arogenate dehydratase 2 
 osa-u.5   4332477   arogenate dehydratase 2 
 osa-u.5   4344396   arogenate dehydratase/prephenate dehydratase 2, chloroplastic 
 zma-u.5   100281744   uncharacterized LOC100281744 
 zma-u.5   100273734   uncharacterized LOC100273734 
 zma-u.5   100273905   uncharacterized LOC100273905 

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Top 50 coexpressed genes to 7479045 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7479045 (ppo-u.5 coexpression data)

CoexMap"7479045"


ppoLOC7479045 | Entrez gene ID : 7479045    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 3 3 2 3 2 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00400 [list] [network] Phenylalanine, tyrosine and tryptophan biosynthesis (58 genes)
pop01230 [list] [network] Biosynthesis of amino acids (287 genes)
GO BP
GO:0009094 [list] [network] L-phenylalanine biosynthetic process  (5 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0004664 [list] [network] prephenate dehydratase activity  (5 genes)  IEA  
GO:0047769 [list] [network] arogenate dehydratase activity  (5 genes)  IEA  
Protein XP_002305566.1 [sequence] [blastp]
XP_024454267.1 [sequence] [blastp]
XP_024454268.1 [sequence] [blastp]
XP_024454269.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  mito 1,  nucl 1,  plas 1,  cyto_mito 1,  nucl_plas 1  (predict for XP_002305566.1)
chlo 4,  cyto 4,  nucl 1,  mito 1,  plas 1,  cysk_nucl 1,  mito_plas 1  (predict for XP_024454267.1)
cyto 8,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_024454268.1)
cyto 8,  chlo 1,  nucl 1,  plas 1,  nucl_plas 1  (predict for XP_024454269.1)
Subcellular
localization
TargetP
chlo 6,  other 3  (predict for XP_002305566.1)
chlo 6,  other 3  (predict for XP_024454267.1)
mito 4,  other 4  (predict for XP_024454268.1)
mito 4,  other 4  (predict for XP_024454269.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7479045

.
ppo-r.4
for
7479045

.
ppo-u.5
for
18111236

.
ppo-u.5
for
7469086

.
gma-u.5
for
100792353

.
gma-u.5
for
100787759

.
gma-u.5
for
100787387

.
mtr-u.5
for
11438633

.
mtr-u.5
for
11417356

.
mtr-u.5
for
11412114

.
ath-u.5
for
ADT2

.
ath-u.5
for
ADT1

.
vvi-u.5
for
100265426

.
vvi-u.5
for
100245164

.
vvi-u.5
for
100245060

.
sly-u.5
for
101251350

.
sly-u.5
for
101251252

.
osa-u.5
for
4332477

.
osa-u.5
for
4344396

.
zma-u.5
for
100281744

.
zma-u.5
for
100273734

.
zma-u.5
for
100273905

.


Ortholog ID: 2143
Species ath ath gma gma sly sly osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit cit bdi bdi nta nta
Symbol ADT1 ADT2 LOC100792353 LOC100787759 LOC101251350 LOC101251252 LOC4344396 LOC100273734 LOC100281744 LOC103836212 LOC100245060 LOC100245164 LOC18111236 LOC7479045 LOC11417356 LOC11438633 LOC123092498 LOC123051364 LOC123424583 LOC123448945 LOC107901960 LOC107891499 LOC106380293 LOC106385680 CHLRE_06g261800v5 LOC8081446 LOC102599157 LOC102602486 LOC102607115 LOC102619743 LOC100837724 LOC100835471 LOC107785483 LOC107767889
Function* arogenate dehydratase 1 arogenate dehydratase 2 arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase 2 arogenate dehydratase/prephenate dehydratase 2, chloroplastic uncharacterized LOC100273734 uncharacterized LOC100281744 arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase 2 arogenate dehydratase 2 arogenate dehydratase 2-like arogenate dehydratase 2-like arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic uncharacterized protein arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 1, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like arogenate dehydratase/prephenate dehydratase 2, chloroplastic-like arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase/prephenate dehydratase 2, chloroplastic arogenate dehydratase 2 arogenate dehydratase/prephenate dehydratase 1, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 6
ath00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
ath00670 One carbon pool by folate 3
ath01200 Carbon metabolism 3
ath00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01230 Biosynthesis of amino acids 9
ath00290 Valine, leucine and isoleucine biosynthesis 3
ath00770 Pantothenate and CoA biosynthesis 2
ath01210 2-Oxocarboxylic acid metabolism 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 3
gma00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
gma00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 4
osa04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00380 Tryptophan metabolism 2
zma04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 2
zma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00073 Cutin, suberine and wax biosynthesis 3
bra01200 Carbon metabolism 2
bra01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01230 Biosynthesis of amino acids 7
vvi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
vvi00062 Fatty acid elongation 2
vvi01040 Biosynthesis of unsaturated fatty acids 2
vvi01212 Fatty acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 2
ppo00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01230 Biosynthesis of amino acids 13
ppo00400 Phenylalanine, tyrosine and tryptophan biosynthesis 7
ppo00670 One carbon pool by folate 5
ppo00270 Cysteine and methionine metabolism 4
ppo00999 Biosynthesis of various plant secondary metabolites 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00943 Isoflavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01230 Biosynthesis of amino acids 11
mtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis 6
mtr01200 Carbon metabolism 5
mtr00670 One carbon pool by folate 4
mtr00350 Tyrosine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00290 Valine, leucine and isoleucine biosynthesis 9
tae01210 2-Oxocarboxylic acid metabolism 9
tae00660 C5-Branched dibasic acid metabolism 6
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01230 Biosynthesis of amino acids 12
tae00400 Phenylalanine, tyrosine and tryptophan biosynthesis 10
tae00260 Glycine, serine and threonine metabolism 2
tae00270 Cysteine and methionine metabolism 2
tae01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 8
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
hvu00940 Phenylpropanoid biosynthesis 3
hvu01200 Carbon metabolism 3
hvu00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00900 Terpenoid backbone biosynthesis 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00240 Pyrimidine metabolism 4
ghi00670 One carbon pool by folate 4
ghi00790 Folate biosynthesis 4
ghi01232 Nucleotide metabolism 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 10
ghi00290 Valine, leucine and isoleucine biosynthesis 8
ghi01210 2-Oxocarboxylic acid metabolism 8
ghi00230 Purine metabolism 4
ghi00770 Pantothenate and CoA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00400 Phenylalanine, tyrosine and tryptophan biosynthesis 4
bna01230 Biosynthesis of amino acids 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01230 Biosynthesis of amino acids 6
cre00970 Aminoacyl-tRNA biosynthesis 4
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00670 One carbon pool by folate 5
sot01200 Carbon metabolism 4
sot01230 Biosynthesis of amino acids 4
sot00330 Arginine and proline metabolism 3
sot00270 Cysteine and methionine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00190 Oxidative phosphorylation 4
sot04142 Lysosome 3
sot04145 Phagosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00920 Sulfur metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 10
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 8
bdi01200 Carbon metabolism 4
bdi01240 Biosynthesis of cofactors 3
bdi00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01230 Biosynthesis of amino acids 8
nta00270 Cysteine and methionine metabolism 6
nta00450 Selenocompound metabolism 6
nta03050 Proteasome 5
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04814 Motor proteins 6
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837725 819954 100792353 100787759 101251350 101251252 4344396 100273734 100281744 103836212 100245060 100245164 18111236 7479045 11417356 11438633 123092498 123051364 123424583 123448945 107901960 107891499 106380293 106385680 5722023 8081446 102599157 102602486 102607115 102619743 100837724 100835471 107785483 107767889
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