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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7479050   starch synthase 3, chloroplastic/amyloplastic 
 ppo-r.4   7479050   starch synthase 3, chloroplastic/amyloplastic 
 ppo-m.4   7479050   starch synthase 3, chloroplastic/amyloplastic 
 gma-u.5   100801729   starch synthase 3, chloroplastic/amyloplastic 
 gma-u.5   100797872   starch synthase 3, chloroplastic/amyloplastic 
 mtr-u.5   25486162   starch synthase 3, chloroplastic/amyloplastic 
 ath-u.5   SS3   starch synthase 3 
 vvi-u.5   100241917   starch synthase 3, chloroplastic/amyloplastic 
 sly-u.5   100316882   starch synthase III 
 osa-u.5   4337056   starch synthase 3, chloroplastic/amyloplastic 
 osa-u.5   9268758   soluble starch synthase 3a, chloroplastic/amyloplastic-like 
 zma-u.5   100101528   starch synthase IIIb-2 precursor 
 zma-u.5   541657   dull endosperm 1 
 zma-u.5   100101527   starch synthase IIIb-1 precursor 

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Top 50 coexpressed genes to 7479050 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7479050 (ppo-u.5 coexpression data)

CoexMap"7479050"


ppoLOC7479050 | Entrez gene ID : 7479050    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 3 2 1 1 1 1 2 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00500 [list] [network] Starch and sucrose metabolism (188 genes)
GO BP
GO CC
GO MF
GO:0004373 [list] [network] alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity  (7 genes)  IEA  
GO:2001070 [list] [network] starch binding  (17 genes)  IEA  
Protein XP_024455405.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  cyto 4  (predict for XP_024455405.2)
Subcellular
localization
TargetP
chlo 4  (predict for XP_024455405.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7479050

.
ppo-r.4
for
7479050

.
ppo-m.4
for
7479050

.
gma-u.5
for
100801729

.
gma-u.5
for
100797872

.
mtr-u.5
for
25486162

.
ath-u.5
for
SS3

.
vvi-u.5
for
100241917

.
sly-u.5
for
100316882

.
osa-u.5
for
4337056

.
osa-u.5
for
9268758

.
zma-u.5
for
100101528

.
zma-u.5
for
541657

.
zma-u.5
for
100101527

.


Ortholog ID: 4811
Species ath gma sly osa osa zma zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre cre sbi sbi sot cit bdi bdi nta nta
Symbol SS3 LOC100797872 LOC100316882 LOC9268758 LOC4337056 LOC100101527 LOC100101528 LOC103836215 LOC103871924 LOC100241917 LOC7479050 LOC25486162 LOC100136992 LOC123054641 LOC123427900 LOC107905928 LOC107935387 LOC106401299 LOC106362162 CHLRE_13g579598v5 CHLRE_06g282000v5 LOC8085013 LOC8066807 LOC102577674 LOC102629511 LOC100825259 LOC100821718 LOC107807810 LOC107770809
Function* starch synthase 3 starch synthase 3, chloroplastic/amyloplastic starch synthase III soluble starch synthase 3a, chloroplastic/amyloplastic-like starch synthase 3, chloroplastic/amyloplastic starch synthase IIIb-1 precursor starch synthase IIIb-2 precursor starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic-like starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic uncharacterized protein uncharacterized protein starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic soluble starch synthase starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic starch synthase 3, chloroplastic/amyloplastic soluble starch synthase 3, chloroplastic/amyloplastic soluble starch synthase 3, chloroplastic/amyloplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00190 Oxidative phosphorylation 2
ath04075 Plant hormone signal transduction 2
ath00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 5
sly00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00500 Starch and sucrose metabolism 4
osa04626 Plant-pathogen interaction 3
osa03018 RNA degradation 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 2
zma04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00500 Starch and sucrose metabolism 4
zma04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra01230 Biosynthesis of amino acids 3
bra03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00350 Tyrosine metabolism 2
bra00360 Phenylalanine metabolism 2
bra00380 Tryptophan metabolism 2
bra00901 Indole alkaloid biosynthesis 2
bra00950 Isoquinoline alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00591 Linoleic acid metabolism 2
vvi00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04712 Circadian rhythm - plant 2
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00500 Starch and sucrose metabolism 3
mtr00620 Pyruvate metabolism 2
mtr00710 Carbon fixation by Calvin cycle 2
mtr01200 Carbon metabolism 2
mtr00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04712 Circadian rhythm - plant 3
tae00500 Starch and sucrose metabolism 3
tae04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 15
ghi04075 Plant hormone signal transduction 3
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00500 Starch and sucrose metabolism 17
ghi00520 Amino sugar and nucleotide sugar metabolism 2
ghi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00500 Starch and sucrose metabolism 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna00561 Glycerolipid metabolism 2
bna00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00561 Glycerolipid metabolism 4
bna00500 Starch and sucrose metabolism 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna00566 Sulfoquinovose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00500 Starch and sucrose metabolism 7
cre00520 Amino sugar and nucleotide sugar metabolism 4
cre01250 Biosynthesis of nucleotide sugars 4
cre01200 Carbon metabolism 3
cre00010 Glycolysis / Gluconeogenesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00500 Starch and sucrose metabolism 9
sbi00520 Amino sugar and nucleotide sugar metabolism 2
sbi01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00500 Starch and sucrose metabolism 12
sot00520 Amino sugar and nucleotide sugar metabolism 3
sot01250 Biosynthesis of nucleotide sugars 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
cit04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00260 Glycine, serine and threonine metabolism 3
bdi00630 Glyoxylate and dicarboxylate metabolism 3
bdi00500 Starch and sucrose metabolism 3
bdi01200 Carbon metabolism 2
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00500 Starch and sucrose metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837716 100797872 100316882 9268758 4337056 100101527 100101528 103836215 103871924 100241917 7479050 25486162 100136992 123054641 123427900 107905928 107935387 106401299 106362162 5719299 5720939 8085013 8066807 102577674 102629511 100825259 100821718 107807810 107770809
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