ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7479892	uncharacterized LOC7479892
ppo-r.4	7479892	uncharacterized LOC7479892
ppo-u.5	7495097	uncharacterized LOC7495097
ppo-u.5	18094071	uncharacterized LOC18094071
gma-u.5	100808780	uncharacterized LOC100808780
gma-u.5	100811917	uncharacterized LOC100811917
gma-u.5	100778628	uncharacterized LOC100778628
mtr-u.5	11415231	uncharacterized LOC11415231
mtr-u.5	11407099	uncharacterized LOC11407099
ath-u.5	AT4G25030	Serine/Threonine-kinase
ath-u.5	AT5G45410	zinc finger B-box protein
vvi-u.5	100261262	uncharacterized LOC100261262
vvi-u.5	100259846	uncharacterized LOC100259846
sly-u.5	101259778	uncharacterized LOC101259778
sly-u.5	101253087	uncharacterized LOC101253087
osa-u.5	4342444	uncharacterized LOC4342444
osa-u.5	4349524	uncharacterized LOC4349524
osa-u.5	4339926	uncharacterized LOC4339926
zma-u.5	100193661	uncharacterized LOC100193661
zma-u.5	100191158	uncharacterized LOC100191158

Top 50 coexpressed genes to 7479892 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7479892 (ppo-u.5 coexpression data)

CoexMap"7479892"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0009507 [list] [network] chloroplast

(718 genes)

IEA

GO MF

Protein

XP_002312026.2 [sequence] [blastp]
XP_052310987.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, mito 2, plas 1, vacu 1, nucl 1, E.R. 1, golg_plas 1, cysk_plas 1, cyto_plas 1	(predict for XP_002312026.2)
chlo 4, mito 2, plas 1, vacu 1, E.R. 1, E.R._vacu 1, E.R._plas 1	(predict for XP_052310987.1)

Subcellular
localization
TargetP

other 5	(predict for XP_002312026.2)
other 5	(predict for XP_052310987.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target		Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7479892 .	ppo-r.4 for 7479892 .	ppo-u.5 for 7495097 .	ppo-u.5 for 18094071 .	gma-u.5 for 100808780 .	gma-u.5 for 100811917 .	gma-u.5 for 100778628 .	mtr-u.5 for 11415231 .	mtr-u.5 for 11407099 .	ath-u.5 for AT4G25030 .	ath-u.5 for AT5G45410 .	vvi-u.5 for 100261262 .	vvi-u.5 for 100259846 .	sly-u.5 for 101259778 .	sly-u.5 for 101253087 .	osa-u.5 for 4342444 .	osa-u.5 for 4349524 .	osa-u.5 for 4339926 .	zma-u.5 for 100193661 .	zma-u.5 for 100191158 .

Ortholog

Ortholog ID: 2288

Species

ath

gma

sly

osa

zma

bra

vvi

ppo

mtr

tae

hvu

ghi

bna

cre

sbi

sot

cit

bdi

nta

Symbol

Function^*

zinc finger B-box protein

Serine/Threonine-kinase

uncharacterized LOC100808780

uncharacterized LOC100778628

uncharacterized LOC101259778

uncharacterized LOC101253087

uncharacterized LOC4349524

uncharacterized LOC4342444

uncharacterized LOC100193661

uncharacterized LOC100191158

uncharacterized LOC103861522

uncharacterized LOC103862826

uncharacterized LOC100259846

uncharacterized LOC100261262

uncharacterized LOC7479892

uncharacterized LOC7495097

uncharacterized LOC11415231

uncharacterized LOC11407099

uncharacterized LOC123126811

uncharacterized LOC123088274

uncharacterized LOC123411533

uncharacterized LOC123437146

uncharacterized LOC107913478

uncharacterized LOC107946810

uncharacterized LOC106366741

uncharacterized LOC106418477

uncharacterized protein

uncharacterized LOC8086277

uncharacterized LOC107062283

uncharacterized LOC102587190

hypothetical protein

uncharacterized LOC102625789

uncharacterized LOC100843192

uncharacterized LOC100824820

uncharacterized LOC107808589

uncharacterized LOC107820392

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00190	Oxidative phosphorylation	3
ath00053	Ascorbate and aldarate metabolism	3
ath00020	Citrate cycle (TCA cycle)	2
ath01200	Carbon metabolism	2
ath00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath01240	Biosynthesis of cofactors	3
ath00020	Citrate cycle (TCA cycle)	2
ath00190	Oxidative phosphorylation	2
ath01200	Carbon metabolism	2
ath00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	4
gma00020	Citrate cycle (TCA cycle)	2
gma00190	Oxidative phosphorylation	2
gma01200	Carbon metabolism	2
gma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	3
sly00941	Flavonoid biosynthesis	3
sly00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
sly04626	Plant-pathogen interaction	3
sly04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	3
osa04626	Plant-pathogen interaction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00520	Amino sugar and nucleotide sugar metabolism	3
zma01250	Biosynthesis of nucleotide sugars	3
zma00860	Porphyrin metabolism	2
zma01240	Biosynthesis of cofactors	2
zma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04148	Efferocytosis	2
bra04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00230	Purine metabolism	5
bra00920	Sulfur metabolism	5
bra01320	Sulfur cycle	5
bra00261	Monobactam biosynthesis	3
bra00450	Selenocompound metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00520	Amino sugar and nucleotide sugar metabolism	3
ppo01250	Biosynthesis of nucleotide sugars	3
ppo04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	5
ppo00620	Pyruvate metabolism	4
ppo00020	Citrate cycle (TCA cycle)	3
ppo00270	Cysteine and methionine metabolism	3
ppo00566	Sulfoquinovose metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr01200	Carbon metabolism	9
mtr00020	Citrate cycle (TCA cycle)	7
mtr01210	2-Oxocarboxylic acid metabolism	5
mtr01230	Biosynthesis of amino acids	5
mtr01240	Biosynthesis of cofactors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03015	mRNA surveillance pathway	3
tae01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00400	Phenylalanine, tyrosine and tryptophan biosynthesis	4
hvu01230	Biosynthesis of amino acids	4
hvu00940	Phenylpropanoid biosynthesis	2
hvu01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03420	Nucleotide excision repair	4
ghi04141	Protein processing in endoplasmic reticulum	4
ghi00030	Pentose phosphate pathway	2
ghi00230	Purine metabolism	2
ghi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit01240	Biosynthesis of cofactors	3
cit01200	Carbon metabolism	3
cit01230	Biosynthesis of amino acids	3
cit00860	Porphyrin metabolism	2
cit00020	Citrate cycle (TCA cycle)	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00190	Oxidative phosphorylation	3
bdi00020	Citrate cycle (TCA cycle)	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	4
bdi00190	Oxidative phosphorylation	2
bdi00020	Citrate cycle (TCA cycle)	2
bdi01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04146	Peroxisome	2
nta00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
nta01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04146	Peroxisome	2
nta00860	Porphyrin metabolism	2
nta01240	Biosynthesis of cofactors	2
nta00190	Oxidative phosphorylation	2
nta00520	Amino sugar and nucleotide sugar metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

834577

828606

100808780

100778628

101259778

101253087

4349524

4342444

100193661

100191158

103861522

103862826

100259846

100261262

7479892

7495097

11415231

11407099

123126811

123088274

123411533

123437146

107913478

107946810

106366741

106418477

5722414

66056954

8086277

107062283

102587190

102609997

102625789

100843192

100824820

107808589

107820392

The preparation time of this page was 0.1 [sec].


Species	ppo	gma	mtr	ath	vvi	sly	osa	zma	sbi	nta	bra	cre	hvu	cit	bdi	sot	tae	bna	ghi
Paralog	4	3	2	2	2	2	3	2	0	0	0	0	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7479892 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7479892 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**