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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480701   general transcription and DNA repair factor IIH helicase subunit XPD 
 ppo-r.4   7480701   general transcription and DNA repair factor IIH helicase subunit XPD 
 ppo-m.4   7480701   general transcription and DNA repair factor IIH helicase subunit XPD 
 gma-u.5   100806384   general transcription and DNA repair factor IIH helicase subunit XPD 
 gma-u.5   100801650   general transcription and DNA repair factor IIH helicase subunit XPD 
 mtr-u.5   25487506   general transcription and DNA repair factor IIH helicase subunit XPD 
 ath-u.5   UVH6   RAD3-like DNA-binding helicase protein 
 vvi-u.5   100240869   general transcription and DNA repair factor IIH helicase subunit XPD 
 sly-u.5   101255497   general transcription and DNA repair factor IIH helicase subunit XPD 
 osa-u.5   4337788   general transcription and DNA repair factor IIH helicase subunit XPD 
 zma-u.5   100285960   DNA repair helicase UVH6 

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Top 50 coexpressed genes to 7480701 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480701 (ppo-u.5 coexpression data)

CoexMap"7480701"


ppoLOC7480701 | Entrez gene ID : 7480701    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03022 [list] [network] Basal transcription factors (55 genes)
pop03420 [list] [network] Nucleotide excision repair (89 genes)
GO BP
GO:0045951 [list] [network] positive regulation of mitotic recombination  (1 genes)  IEA  
GO:0006289 [list] [network] nucleotide-excision repair  (41 genes)  IEA  
GO:0006366 [list] [network] transcription by RNA polymerase II  (78 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0003684 [list] [network] damaged DNA binding  (35 genes)  IEA  
GO:0003678 [list] [network] DNA helicase activity  (47 genes)  IEA  
GO:0016818 [list] [network] hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides  (909 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_002300852.1 [sequence] [blastp]
XP_052306780.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  cyto 3,  cyto_nucl 3,  chlo 1,  E.R. 1,  cysk_nucl 1,  cyto_pero 1  (predict for XP_002300852.1)
cyto 3,  chlo 2,  nucl 2,  cyto_E.R. 2  (predict for XP_052306780.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002300852.1)
other 7  (predict for XP_052306780.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480701

.
ppo-r.4
for
7480701

.
ppo-m.4
for
7480701

.
gma-u.5
for
100806384

.
gma-u.5
for
100801650

.
mtr-u.5
for
25487506

.
ath-u.5
for
UVH6

.
vvi-u.5
for
100240869

.
sly-u.5
for
101255497

.
osa-u.5
for
4337788

.
zma-u.5
for
100285960

.


Ortholog ID: 9236
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol UVH6 LOC100801650 LOC100806384 LOC101255497 LOC4337788 LOC100285960 LOC103836626 LOC100240869 LOC7480701 LOC25487506 LOC123111455 LOC123191077 LOC123424653 LOC107914545 LOC107924032 LOC106402169 LOC106401479 CHLRE_17g706300v5 LOC8075957 LOC102581333 LOC102618714 LOC100833387 LOC100824230 LOC142161633 LOC107793390
Function* RAD3-like DNA-binding helicase protein general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD DNA repair helicase UVH6 general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD-like general transcription and DNA repair factor IIH helicase subunit XPD uncharacterized protein DNA repair helicase XPD DNA repair helicase UVH6 general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD general transcription and DNA repair factor IIH helicase subunit XPD-like general transcription and DNA repair factor IIH helicase subunit XPD
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 3
gma03040 Spliceosome 3
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03015 mRNA surveillance pathway 4
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa03015 mRNA surveillance pathway 3
osa03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 3
zma03420 Nucleotide excision repair 2
zma04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 7
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04141 Protein processing in endoplasmic reticulum 2
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 5
tae03013 Nucleocytoplasmic transport 5
tae03018 RNA degradation 3
tae03022 Basal transcription factors 2
tae03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 5
ghi03410 Base excision repair 4
ghi03022 Basal transcription factors 3
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03420 Nucleotide excision repair 4
ghi03022 Basal transcription factors 3
ghi03410 Base excision repair 3
ghi00780 Biotin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03250 Viral life cycle - HIV-1 3
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03250 Viral life cycle - HIV-1 3
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
bdi03420 Nucleotide excision repair 2
bdi03040 Spliceosome 2
bdi00061 Fatty acid biosynthesis 2
bdi00062 Fatty acid elongation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03022 Basal transcription factors 2
bdi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00531 Glycosaminoglycan degradation 2
nta04142 Lysosome 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00531 Glycosaminoglycan degradation 2
nta04142 Lysosome 2
nta03022 Basal transcription factors 2
nta03420 Nucleotide excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839557 100801650 100806384 101255497 4337788 100285960 103836626 100240869 7480701 25487506 123111455 123191077 123424653 107914545 107924032 106402169 106401479 5717204 8075957 102581333 102618714 100833387 100824230 142161633 107793390
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