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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480754   ferredoxin-A 
 ppo-r.4   7480754   ferredoxin-A 
 ppo-u.5   7471708   uncharacterized LOC7471708 
 ppo-u.5   7474908   uncharacterized LOC7474908 
 ppo-u.5   7477164   ferredoxin, root R-B1 
 gma-u.5   100808254   ferredoxin-A 
 gma-u.5   100500583   uncharacterized LOC100500583 
 gma-u.5   100785611   ferredoxin-3, chloroplastic-like 
 mtr-u.5   25485574   ferredoxin, root R-B1 
 mtr-u.5   25485576   ferredoxin, root R-B1 
 mtr-u.5   11445243   ferredoxin, root R-B1 
 ath-u.5   FD3   ferredoxin 3 
 ath-u.5   FD1   ferredoxin 1 
 ath-u.5   FED A   2Fe-2S ferredoxin-like superfamily protein 
 vvi-u.5   100249080   ferredoxin 
 vvi-u.5   100251971   ferredoxin, root R-B2 
 vvi-u.5   100266537   ferredoxin, root R-B1 
 sly-u.5   101265784   ferredoxin 
 sly-u.5   101266472   ferredoxin, root R-B2 
 sly-u.5   101248335   ferredoxin 
 osa-u.5   9270637   ferredoxin, root R-B1 
 osa-u.5   4335779   uncharacterized LOC4335779 
 osa-u.5   4334701   ferredoxin-3, chloroplastic 
 zma-u.5   100191704   Ferredoxin-3 chloroplastic 
 zma-u.5   103653165   ferredoxin 
 zma-u.5   100283643   ferredoxin-3 

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Top 50 coexpressed genes to 7480754 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480754 (ppo-u.5 coexpression data)

CoexMap"7480754"


ppoLOC7480754 | Entrez gene ID : 7480754    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 3 3 3 3 3 3 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00195 [list] [network] Photosynthesis (104 genes)
GO BP
GO:0022900 [list] [network] electron transport chain  (96 genes)  IEA  
GO CC
GO:0009507 [list] [network] chloroplast  (718 genes)  IEA  
GO MF
GO:0051537 [list] [network] 2 iron, 2 sulfur cluster binding  (46 genes)  IEA  
GO:0009055 [list] [network] electron transfer activity  (101 genes)  IEA  
Protein XP_002304053.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_002304053.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002304053.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480754

.
ppo-r.4
for
7480754

.
ppo-u.5
for
7471708

.
ppo-u.5
for
7474908

.
ppo-u.5
for
7477164

.
gma-u.5
for
100808254

.
gma-u.5
for
100500583

.
gma-u.5
for
100785611

.
mtr-u.5
for
25485574

.
mtr-u.5
for
25485576

.
mtr-u.5
for
11445243

.
ath-u.5
for
FD3

.
ath-u.5
for
FD1

.
ath-u.5
for
FED A

.
vvi-u.5
for
100249080

.
vvi-u.5
for
100251971

.
vvi-u.5
for
100266537

.
sly-u.5
for
101265784

.
sly-u.5
for
101266472

.
sly-u.5
for
101248335

.
osa-u.5
for
9270637

.
osa-u.5
for
4335779

.
osa-u.5
for
4334701

.
zma-u.5
for
100191704

.
zma-u.5
for
103653165

.
zma-u.5
for
100283643

.


Ortholog ID: 404
Species ath ath gma gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre cre sbi sot sot cit cit bdi bdi nta nta
Symbol FD1 FD3 LOC100305932 LOC100807723 LOC101252890 LOC101266472 LOC4334701 LOC9270637 LOC101027099 LOC100382495 LOC103838467 LOC103871871 LOC100266537 LOC100251971 LOC7471708 LOC18098271 LOC25485574 LOC25485576 LOC123057926 LOC123045401 LOC123407396 LOC123407397 LOC107938315 LOC107953421 LOC106451716 LOC106392068 CHLRE_14g626700v5 CHLRE_17g700950v5 LOC8079664 LOC102598947 LOC102581844 LOC102608949 LOC102612085 LOC100833568 LOC100826463 LOC107780371 LOC107818034
Function* ferredoxin 1 ferredoxin 3 2Fe-2S ferredoxin-like superfamily protein ferredoxin-A uncharacterized LOC101252890 ferredoxin, root R-B2 ferredoxin-3, chloroplastic ferredoxin, root R-B1 ferredoxin 1 putative ferredoxin-4 chloroplastic ferredoxin, leaf L-A ferredoxin-1, chloroplastic ferredoxin, root R-B1 ferredoxin, root R-B2 uncharacterized LOC7471708 ferredoxin ferredoxin, root R-B1 ferredoxin, root R-B1 ferredoxin-6, chloroplastic ferredoxin-1 ferredoxin, chloroplastic ferredoxin-like ferredoxin, root R-B2 ferredoxin-2 ferredoxin-1, chloroplastic-like ferredoxin, root R-B1-like uncharacterized protein uncharacterized protein ferredoxin-3, chloroplastic ferredoxin-like ferredoxin, root R-B2-like ferredoxin, root R-B2 ferredoxin, root R-B1-like ferredoxin-6, chloroplastic ferredoxin ferredoxin ferredoxin, root R-B2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 3
ath00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01200 Carbon metabolism 8
ath00030 Pentose phosphate pathway 6
ath00010 Glycolysis / Gluconeogenesis 4
ath01230 Biosynthesis of amino acids 4
ath00480 Glutathione metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 12
gma00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00860 Porphyrin metabolism 6
gma01240 Biosynthesis of cofactors 4
gma00195 Photosynthesis 2
gma00910 Nitrogen metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00010 Glycolysis / Gluconeogenesis 2
sly00020 Citrate cycle (TCA cycle) 2
sly00620 Pyruvate metabolism 2
sly00785 Lipoic acid metabolism 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04016 MAPK signaling pathway - plant 7
sly04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 3
osa03083 Polycomb repressive complex 2
osa04120 Ubiquitin mediated proteolysis 2
osa00195 Photosynthesis 2
osa00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00910 Nitrogen metabolism 5
osa01310 Nitrogen cycle 5
osa01200 Carbon metabolism 3
osa00195 Photosynthesis 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 7
zma00196 Photosynthesis - antenna proteins 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 12
zma03040 Spliceosome 2
zma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 7
bra01200 Carbon metabolism 5
bra00710 Carbon fixation by Calvin cycle 4
bra00630 Glyoxylate and dicarboxylate metabolism 4
bra00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 10
vvi01200 Carbon metabolism 2
vvi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00710 Carbon fixation by Calvin cycle 7
ppo01200 Carbon metabolism 7
ppo00195 Photosynthesis 6
ppo00196 Photosynthesis - antenna proteins 3
ppo00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr00195 Photosynthesis 3
mtr01230 Biosynthesis of amino acids 2
mtr01240 Biosynthesis of cofactors 2
mtr00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr00195 Photosynthesis 3
mtr01230 Biosynthesis of amino acids 2
mtr01240 Biosynthesis of cofactors 2
mtr00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00030 Pentose phosphate pathway 6
tae01200 Carbon metabolism 6
tae00195 Photosynthesis 5
tae00480 Glutathione metabolism 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00195 Photosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 2
hvu01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00630 Glyoxylate and dicarboxylate metabolism 2
ghi00710 Carbon fixation by Calvin cycle 2
ghi01200 Carbon metabolism 2
ghi00195 Photosynthesis 2
ghi00430 Taurine and hypotaurine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 13
ghi00750 Vitamin B6 metabolism 3
ghi01240 Biosynthesis of cofactors 3
ghi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 8
bna00906 Carotenoid biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00710 Carbon fixation by Calvin cycle 6
cre01200 Carbon metabolism 6
cre00195 Photosynthesis 5
cre00190 Oxidative phosphorylation 3
cre00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00330 Arginine and proline metabolism 3
cre00860 Porphyrin metabolism 2
cre00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 3
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 8
sot00710 Carbon fixation by Calvin cycle 2
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 16
sot00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00480 Glutathione metabolism 3
cit01200 Carbon metabolism 3
cit00030 Pentose phosphate pathway 2
cit01230 Biosynthesis of amino acids 2
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 8
cit03010 Ribosome 2
cit00195 Photosynthesis 2
cit00710 Carbon fixation by Calvin cycle 2
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00710 Carbon fixation by Calvin cycle 3
bdi01200 Carbon metabolism 3
bdi00630 Glyoxylate and dicarboxylate metabolism 2
bdi00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 6
nta01200 Carbon metabolism 6
nta04146 Peroxisome 5
nta00196 Photosynthesis - antenna proteins 2
nta00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04016 MAPK signaling pathway - plant 5
nta04075 Plant hormone signal transduction 5
nta00195 Photosynthesis 2
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837639 817297 100305932 100807723 101252890 101266472 4334701 9270637 101027099 100382495 103838467 103871871 100266537 100251971 7471708 18098271 25485574 25485576 123057926 123045401 123407396 123407397 107938315 107953421 106451716 106392068 5718285 5717303 8079664 102598947 102581844 102608949 102612085 100833568 100826463 107780371 107818034
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