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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7480889   pre-mRNA-processing factor 19 homolog 2 
 ppo-r.4   7480889   pre-mRNA-processing factor 19 homolog 2 
 ppo-m.4   7480889   pre-mRNA-processing factor 19 homolog 2 
 ppo-u.5   7459990   pre-mRNA-processing factor 19 homolog 2 
 gma-u.5   100800213   pre-mRNA-processing factor 19 
 gma-u.5   100527039   pre-mRNA-processing factor 19 homolog 2 
 mtr-u.5   11431087   pre-mRNA-processing factor 19 
 ath-u.5   MAC3B   MOS4-associated complex 3B 
 ath-u.5   MAC3A   MOS4-associated complex 3A 
 vvi-u.5   100249408   pre-mRNA-processing factor 19 
 sly-u.5   101263464   pre-mRNA-processing factor 19 
 osa-u.5   4348844   pre-mRNA-processing factor 19-like 
 zma-u.5   100191855   uncharacterized LOC100191855 
 zma-u.5   100284255   pre-mRNA-splicing factor 19 

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Top 50 coexpressed genes to 7480889 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7480889 (ppo-u.5 coexpression data)

CoexMap"7480889"


ppoLOC7480889 | Entrez gene ID : 7480889    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03040 [list] [network] Spliceosome (338 genes)
pop04120 [list] [network] Ubiquitin mediated proteolysis (184 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (213 genes)  IEA  
GO:0006281 [list] [network] DNA repair  (290 genes)  IEA  
GO:0016567 [list] [network] protein ubiquitination  (417 genes)  IEA  
GO CC
GO:0071006 [list] [network] U2-type catalytic step 1 spliceosome  (5 genes)  IEA  
GO:0000974 [list] [network] Prp19 complex  (12 genes)  IEA  
GO:0005737 [list] [network] cytoplasm  (6111 genes)  IEA  
GO MF
GO:0061630 [list] [network] ubiquitin protein ligase activity  (225 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002311694.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for XP_002311694.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002311694.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7480889

.
ppo-r.4
for
7480889

.
ppo-m.4
for
7480889

.
ppo-u.5
for
7459990

.
gma-u.5
for
100800213

.
gma-u.5
for
100527039

.
mtr-u.5
for
11431087

.
ath-u.5
for
MAC3B

.
ath-u.5
for
MAC3A

.
vvi-u.5
for
100249408

.
sly-u.5
for
101263464

.
osa-u.5
for
4348844

.
zma-u.5
for
100191855

.
zma-u.5
for
100284255

.


Ortholog ID: 4050
Species ath ath gma gma sly osa zma zma bra vvi ppo ppo mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot sot cit bdi bdi nta nta
Symbol MAC3A MAC3B LOC100527039 LOC100800213 LOC101263464 LOC4348844 LOC100284255 LOC100191855 LOC103844248 LOC100249408 LOC7480889 LOC7459990 LOC11431087 LOC123098972 LOC123044996 LOC123430509 LOC123449851 LOC107932162 LOC107940133 LOC106447146 LOC111200417 CHLRE_02g073650v5 LOC8059260 LOC102600710 LOC102592190 LOC102630495 LOC100837922 LOC100829617 LOC107764234 LOC107769884
Function* MOS4-associated complex 3A MOS4-associated complex 3B pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19-like pre-mRNA-splicing factor 19 uncharacterized LOC100191855 pre-mRNA-processing factor 19 homolog 1 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19-like pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 2-like pre-mRNA-processing factor 19 homolog 1 uncharacterized protein pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 1-like pre-mRNA-processing factor 19 homolog 2 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 pre-mRNA-processing factor 19 homolog 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 3
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 3
ath03082 ATP-dependent chromatin remodeling 2
ath04144 Endocytosis 2
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03015 mRNA surveillance pathway 3
gma03013 Nucleocytoplasmic transport 2
gma03022 Basal transcription factors 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03013 Nucleocytoplasmic transport 9
gma03040 Spliceosome 4
gma03008 Ribosome biogenesis in eukaryotes 3
gma03250 Viral life cycle - HIV-1 3
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 5
osa03040 Spliceosome 4
osa03013 Nucleocytoplasmic transport 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma03082 ATP-dependent chromatin remodeling 2
zma03013 Nucleocytoplasmic transport 2
zma04120 Ubiquitin mediated proteolysis 2
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 6
zma03040 Spliceosome 3
zma03082 ATP-dependent chromatin remodeling 2
zma03083 Polycomb repressive complex 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
bra03020 RNA polymerase 2
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 2
vvi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00970 Aminoacyl-tRNA biosynthesis 2
ppo03040 Spliceosome 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 2
ppo04120 Ubiquitin mediated proteolysis 2
ppo04075 Plant hormone signal transduction 2
ppo03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 5
tae04120 Ubiquitin mediated proteolysis 3
tae03013 Nucleocytoplasmic transport 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 6
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 10
ghi03013 Nucleocytoplasmic transport 8
ghi03015 mRNA surveillance pathway 8
ghi04120 Ubiquitin mediated proteolysis 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 8
ghi03013 Nucleocytoplasmic transport 6
ghi03015 mRNA surveillance pathway 6
ghi00970 Aminoacyl-tRNA biosynthesis 4
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 4
bna03040 Spliceosome 4
bna04120 Ubiquitin mediated proteolysis 4
bna04122 Sulfur relay system 3
bna00540 Lipopolysaccharide biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 5
bna04120 Ubiquitin mediated proteolysis 3
bna03013 Nucleocytoplasmic transport 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 13
cre03013 Nucleocytoplasmic transport 2
cre03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03015 mRNA surveillance pathway 2
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03013 Nucleocytoplasmic transport 5
sot03015 mRNA surveillance pathway 5
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04120 Ubiquitin mediated proteolysis 2
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03050 Proteasome 3
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 3
bdi03060 Protein export 3
bdi03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 6
bdi03015 mRNA surveillance pathway 6
bdi03013 Nucleocytoplasmic transport 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 6
nta04120 Ubiquitin mediated proteolysis 5
nta03030 DNA replication 2
nta03410 Base excision repair 2
nta03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 7
nta04120 Ubiquitin mediated proteolysis 4
nta03010 Ribosome 2
nta03030 DNA replication 2
nta03410 Base excision repair 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839503 817897 100527039 100800213 101263464 4348844 100284255 100191855 103844248 100249408 7480889 7459990 11431087 123098972 123044996 123430509 123449851 107932162 107940133 106447146 111200417 5727163 8059260 102600710 102592190 102630495 100837922 100829617 107764234 107769884
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