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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7483629   DNA mismatch repair protein MSH5 
 ppo-r.4   7483629   DNA mismatch repair protein MSH5 
 ppo-m.4   7483629   DNA mismatch repair protein MSH5 
 gma-u.5   100797567   DNA mismatch repair protein MSH5-like 
 gma-u.5   100794332   DNA mismatch repair protein MSH5 
 vvi-u.5   100252044   DNA mismatch repair protein MSH5 
 sly-u.5   101243646   DNA mismatch repair protein MSH5 
 osa-u.5   4339215   DNA mismatch repair protein MSH5-like 
 zma-u.5   103635819   DNA mismatch repair protein MSH5 
 zma-u.5   100217093   uncharacterized LOC100217093 

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Top 50 coexpressed genes to 7483629 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7483629 (ppo-u.5 coexpression data)

CoexMap"7483629"


ppoLOC7483629 | Entrez gene ID : 7483629    
Species ppo gma vvi sly osa zma cre mtr ghi cit hvu bdi sot bra sbi tae ath nta bna
Paralog 3 2 1 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051026 [list] [network] chiasma assembly  (3 genes)  IEA  
GO:0006298 [list] [network] mismatch repair  (21 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0030983 [list] [network] mismatched DNA binding  (16 genes)  IEA  
GO:0140664 [list] [network] ATP-dependent DNA damage sensor activity  (25 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
Protein XP_024467350.2 [sequence] [blastp]
XP_024467351.2 [sequence] [blastp]
XP_024467352.2 [sequence] [blastp]
XP_024467354.2 [sequence] [blastp]
XP_024467355.2 [sequence] [blastp]
XP_024467356.2 [sequence] [blastp]
XP_024467357.2 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  E.R. 2,  nucl 1,  plas 1,  vacu 1,  nucl_plas 1  (predict for XP_024467350.2)
cyto 4,  E.R. 2,  nucl 1,  plas 1,  vacu 1,  nucl_plas 1  (predict for XP_024467351.2)
cyto 3,  nucl 2,  E.R. 2,  cyto_plas 2  (predict for XP_024467352.2)
cyto 4,  chlo 2,  cyto_pero 2,  plas 1,  chlo_mito 1  (predict for XP_024467354.2)
cyto 4,  chlo 2,  cyto_pero 2,  plas 1,  chlo_mito 1  (predict for XP_024467355.2)
cyto 4,  chlo 2,  cyto_pero 2,  plas 1,  chlo_mito 1  (predict for XP_024467356.2)
cyto 4,  E.R. 3,  chlo 1,  nucl 1,  mito 1,  plas 1,  vacu 1,  chlo_mito 1,  nucl_plas 1,  mito_plas 1  (predict for XP_024467357.2)
Subcellular
localization
TargetP
other 8  (predict for XP_024467350.2)
other 8  (predict for XP_024467351.2)
other 8  (predict for XP_024467352.2)
scret 5  (predict for XP_024467354.2)
scret 5  (predict for XP_024467355.2)
scret 5  (predict for XP_024467356.2)
other 7  (predict for XP_024467357.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7483629

.
ppo-r.4
for
7483629

.
ppo-m.4
for
7483629

.
gma-u.5
for
100797567

.
gma-u.5
for
100794332

.
vvi-u.5
for
100252044

.
sly-u.5
for
101243646

.
osa-u.5
for
4339215

.
zma-u.5
for
103635819

.
zma-u.5
for
100217093

.


Ortholog ID: 8952
Species gma gma sly osa zma zma vvi ppo tae hvu cre sbi sot bdi nta nta
Symbol LOC100797567 LOC100794332 LOC101243646 LOC4339215 LOC100217093 LOC103635819 LOC100252044 LOC7483629 LOC123182494 LOC123443600 CHLRE_17g713650v5 LOC8067462 LOC102603553 LOC100831648 LOC107802701 LOC107763815
Function* DNA mismatch repair protein MSH5-like DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5-like uncharacterized LOC100217093 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 uncharacterized protein DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5 DNA mismatch repair protein MSH5-like DNA mismatch repair protein MSH5
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00562 Inositol phosphate metabolism 2
gma04070 Phosphatidylinositol signaling system 2
gma03015 mRNA surveillance pathway 2
gma00062 Fatty acid elongation 2
gma01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
hvu03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00280 Valine, leucine and isoleucine degradation 2
nta00410 beta-Alanine metabolism 2
nta00562 Inositol phosphate metabolism 2
nta00640 Propanoate metabolism 2
nta01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 4
nta03460 Fanconi anemia pathway 2
nta04814 Motor proteins 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100797567 100794332 101243646 4339215 100217093 103635819 100252044 7483629 123182494 123443600 5726009 8067462 102603553 100831648 107802701 107763815
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