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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7475736   gibberellin 3-beta-dioxygenase 1 
 gma-u.5   GA3OX1   gibberellin 3-beta-dioxygenase 1 
 gma-u.5   100794180   gibberellin 3-beta-dioxygenase 1 
 mtr-u.5   11432515   gibberellin 3-beta-dioxygenase 1 
 mtr-u.5   11432838   gibberellin 3-beta-dioxygenase 1 
 ath-u.5   GA3OX2   gibberellin 3-oxidase 2 
 ath-u.5   GA3OX1   gibberellin 3-oxidase 1 
 bra-r.6   103832494   gibberellin 3-beta-dioxygenase 2 
 ghi-r.1   107956573   gibberellin 3-beta-dioxygenase 1 
 ghi-r.1   121230816   gibberellin 3-beta-dioxygenase 1 
 ghi-r.1   107897230   gibberellin 3-beta-dioxygenase 1 
 bna-r.1   125586159   gibberellin 3-beta-dioxygenase 4-like 
 sly-u.5   101257892   gibberellin 3-beta-dioxygenase 1-like 
 sly-u.5   3OH-2   3b-hydroxylase 
 sot-r.1   102596258   gibberellin 3-beta-dioxygenase 1-like 
 sot-r.1   102585743   gibberellin 3-beta-dioxygenase 1-like 
 sot-r.1   102597914   gibberellin 3-beta-dioxygenase 1-like 
 nta-r.1   107821651   gibberellin 3-beta-dioxygenase 1 
 osa-u.5   4323864   gibberellin 3-beta-dioxygenase 2-like 
 zma-u.5   Dwarf1   Gibberellin 3-oxidase 
 tae-r.2   123042616   gibberellin 3-beta-dioxygenase 2-1-like 
 tae-r.2   123042617   gibberellin 3-beta-dioxygenase 2-2-like 
 tae-r.2   123069032   gibberellin 3-beta-dioxygenase 2-3 
 hvu-r.1   123439542   gibberellin 3-beta-dioxygenase 2-2 
 sbi-r.1   8078789   gibberellin 3-beta-dioxygenase 2-2 
 bdi-r.1   100835718   gibberellin 3-beta-dioxygenase 2-2 

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Top 50 coexpressed genes to 7475736 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7475736 (ppo-u.5 coexpression data)

CoexMap"7486634"


ppoLOC7486634 | Entrez gene ID : 7486634    
Species ppo gma mtr ath bra ghi bna sly sot nta osa zma tae hvu sbi bdi vvi cre cit
Paralog 1 2 2 2 1 3 1 2 3 1 1 1 3 1 1 1 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00904 [list] [network] Diterpenoid biosynthesis (33 genes)
GO BP
GO:0009686 [list] [network] gibberellin biosynthetic process  (16 genes)  IEA  
GO:0009416 [list] [network] response to light stimulus  (143 genes)  IEA  
GO CC
GO MF
GO:0016707 [list] [network] gibberellin 3-beta-dioxygenase activity  (4 genes)  IEA  
Protein XP_002299619.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  chlo 2,  mito 2,  cyto_nucl 2,  chlo_mito 2  (predict for XP_002299619.2)
Subcellular
localization
TargetP
other 7,  mito 5  (predict for XP_002299619.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7475736
gma-u.5
for
GA3OX1
gma-u.5
for
100794180
mtr-u.5
for
11432515
mtr-u.5
for
11432838
ath-u.5
for
GA3OX2
ath-u.5
for
GA3OX1
bra-r.6
for
103832494
ghi-r.1
for
107956573
ghi-r.1
for
121230816
ghi-r.1
for
107897230
bna-r.1
for
125586159
sly-u.5
for
101257892
sly-u.5
for
3OH-2
sot-r.1
for
102596258
sot-r.1
for
102585743
sot-r.1
for
102597914
nta-r.1
for
107821651
osa-u.5
for
4323864
zma-u.5
for
Dwarf1
tae-r.2
for
123042616
tae-r.2
for
123042617
tae-r.2
for
123069032
hvu-r.1
for
123439542
sbi-r.1
for
8078789
bdi-r.1
for
100835718


Ortholog ID: 1181
Species ppo gma mtr mtr ath bra ghi ghi bna sly sly sot sot nta nta osa zma tae tae hvu sbi bdi
Symbol LOC7475736 GA3OX3 LOC11432515 LOC11432838 GA3OX2 LOC103872350 LOC107914840 LOC107937357 LOC106398553 3OH-2 GA3ox1 LOC102597914 LOC107059310 LOC107821651 LOC107824735 LOC4323864 Dwarf1 LOC123042616 LOC123186485 LOC123439542 LOC8078789 LOC100835718
Function* gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 3 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1 gibberellin 3-oxidase 2 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 4 3b-hydroxylase gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1-like gibberellin 3-beta-dioxygenase 1-like gibberellin 3-beta-dioxygenase 1 gibberellin 3-beta-dioxygenase 1-like gibberellin 3-beta-dioxygenase 2-like Gibberellin 3-oxidase gibberellin 3-beta-dioxygenase 2-1-like gibberellin 3-beta-dioxygenase 2-3-like gibberellin 3-beta-dioxygenase 2-2 gibberellin 3-beta-dioxygenase 2-2 gibberellin 3-beta-dioxygenase 2-2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00902 Monoterpenoid biosynthesis 2
mtr00944 Flavone and flavonol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00941 Flavonoid biosynthesis 4
ath04712 Circadian rhythm - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00904 Diterpenoid biosynthesis 2
bra00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00250 Alanine, aspartate and glutamate metabolism 2
ghi01230 Biosynthesis of amino acids 2
ghi00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00904 Diterpenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 2
nta00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 2
tae00904 Diterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00591 Linoleic acid metabolism 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 7475736 100776755 11432515 11432838 844374 103872350 107914840 107937357 106398553 543504 543503 102597914 107059310 107821651 107824735 4323864 101202726 123042616 123186485 123439542 8078789 100835718
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