ATTED-II : GeneCoexpression result

Species	Gene	Description
ppo-m.4	7486725	uncharacterized LOC7486725
gma-u.5	100798949	uncharacterized LOC100798949
mtr-u.5	11407596	uncharacterized LOC11407596
ath-u.5	AT1G48580	nuclear localized protein
bra-r.6	103871461	uncharacterized LOC103871461
vvi-u.5	100256164	uncharacterized LOC100256164
ghi-r.1	107953318	uncharacterized LOC107953318
ghi-r.1	107926582	uncharacterized LOC107926582
bna-r.1	106406483	uncharacterized LOC106406483
bna-r.1	111204642	uncharacterized LOC111204642
cit-r.1	102620779	uncharacterized LOC102620779
sly-u.5	101245148	uncharacterized LOC101245148
sot-r.1	102595818	uncharacterized LOC102595818
nta-r.1	107809632	uncharacterized LOC107809632
nta-r.1	107799381	uncharacterized LOC107799381
osa-u.5	9272173	uncharacterized LOC9272173
zma-u.5	100272709	uncharacterized LOC100272709
hvu-r.1	123450775	uncharacterized LOC123450775
sbi-r.1	8054437	uncharacterized LOC8054437
cre-r.1	CHLRE_03g201700v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0000725 [list] [network] recombinational repair

(79 genes)

IEA

GO CC

GO MF

Protein

XP_024438038.2 [sequence] [blastp]

Subcellular
localization
wolf

chlo 3, plas 2, extr 1, vacu 1, mito_plas 1, cyto_plas 1

(predict for XP_024438038.2)

Subcellular
localization
TargetP

other 8

(predict for XP_024438038.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-m.4 for 7486725	gma-u.5 for 100798949	mtr-u.5 for 11407596	ath-u.5 for AT1G48580	bra-r.6 for 103871461	vvi-u.5 for 100256164	ghi-r.1 for 107953318	ghi-r.1 for 107926582	bna-r.1 for 106406483	bna-r.1 for 111204642	cit-r.1 for 102620779	sly-u.5 for 101245148	sot-r.1 for 102595818	nta-r.1 for 107809632	nta-r.1 for 107799381	osa-u.5 for 9272173	zma-u.5 for 100272709	hvu-r.1 for 123450775	sbi-r.1 for 8054437	cre-r.1 for CHLRE_03g201700v5

Ortholog

Ortholog ID: 11081

Species

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

hvu

sbi

cre

Symbol

Function^*

uncharacterized LOC100798949

uncharacterized LOC11407596

nuclear localized protein

uncharacterized LOC103871461

uncharacterized LOC100256164

uncharacterized LOC107953318

uncharacterized LOC107926582

uncharacterized LOC106406483

uncharacterized LOC111204642

uncharacterized LOC102620779

uncharacterized LOC101245148

uncharacterized LOC102595818

uncharacterized LOC107809632

uncharacterized LOC107799381

uncharacterized LOC9272173

uncharacterized LOC100272709

uncharacterized LOC123450775

uncharacterized LOC8054437

uncharacterized protein

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	13
gma00240	Pyrimidine metabolism	3
gma01232	Nucleotide metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04814	Motor proteins	5
ath03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi00999	Biosynthesis of various plant secondary metabolites	2
ghi01230	Biosynthesis of amino acids	2
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00400	Phenylalanine, tyrosine and tryptophan biosynthesis	2
ghi00999	Biosynthesis of various plant secondary metabolites	2
ghi01230	Biosynthesis of amino acids	2
ghi03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna04120	Ubiquitin mediated proteolysis	2
bna03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00520	Amino sugar and nucleotide sugar metabolism	2
cit01250	Biosynthesis of nucleotide sugars	2
cit04120	Ubiquitin mediated proteolysis	2
cit03022	Basal transcription factors	2
cit04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00230	Purine metabolism	2
sot00240	Pyrimidine metabolism	2
sot00480	Glutathione metabolism	2
sot01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03440	Homologous recombination	4
nta03460	Fanconi anemia pathway	4
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	5

Expression

Expression pattern

Entrez Gene ID^*

100798949

11407596

841279

103871461

100256164

107953318

107926582

106406483

111204642

102620779

101245148

102595818

107809632

107799381

9272173

100272709

123450775

8054437

5718909

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 7486725 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7486725 (ppo-m.4 coexpression data)


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	hvu	sbi	cre	bdi	tae
Paralog	1	1	1	1	1	1	2	2	1	1	1	2	1	1	1	1	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7486725 (ppo-m.4 coexpression data)

Top 50 enrichment test to 7486725 (ppo-m.4 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**