ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ppo-u.5	7488172	uncharacterized LOC7488172
ppo-r.4	7488172	uncharacterized LOC7488172
ppo-m.4	7488172	uncharacterized LOC7488172
ppo-u.5	7476829	uncharacterized LOC7476829
ppo-u.5	7460272	uncharacterized LOC7460272
ppo-u.5	7486653	uncharacterized LOC7486653
gma-u.5	100818661	uncharacterized LOC100818661
gma-u.5	100814178	uncharacterized LOC100814178
gma-u.5	100812051	uncharacterized LOC100812051
mtr-u.5	11432905	uncharacterized LOC11432905
mtr-u.5	11425035	uncharacterized LOC11425035
ath-u.5	AT2G26920	Ubiquitin-associated/translation elongation factor EF1B protein
ath-u.5	AT5G12120	Ubiquitin-associated/translation elongation factor EF1B protein
bra-r.6	103850814	uncharacterized LOC103850814
bra-r.6	103855955	uncharacterized LOC103855955
bra-r.6	103846666	uncharacterized LOC103846666
vvi-u.5	100249621	uncharacterized LOC100249621
vvi-u.5	100241032	uncharacterized LOC100241032
ghi-r.1	107959287	uncharacterized LOC107959287
ghi-r.1	107944807	uncharacterized LOC107944807
ghi-r.1	107939465	uncharacterized LOC107939465
bna-r.1	125584065	uncharacterized LOC125584065
bna-r.1	106424604	uncharacterized LOC106424604
bna-r.1	BNAA03G03790D	uncharacterized BNAA03G03790D
cit-r.1	102631456	uncharacterized LOC102631456
sly-u.5	101244382	uncharacterized LOC101244382
sly-u.5	101267483	uncharacterized LOC101267483
sot-r.1	102592401	uncharacterized LOC102592401
sot-r.1	102591842	uncharacterized LOC102591842
nta-r.1	107759615	uncharacterized LOC107759615
nta-r.1	107809605	uncharacterized LOC107809605
nta-r.1	107770899	uncharacterized LOC107770899
osa-u.5	4338769	uncharacterized LOC4338769
zma-u.5	100382598	uncharacterized LOC100382598
zma-u.5	100383949	Ubiquitin-associated/translation elongation factor EF1B protein
tae-r.2	123132486	uncharacterized LOC123132486
tae-r.2	123055380	uncharacterized LOC123055380
tae-r.2	123181993	uncharacterized LOC123181993
hvu-r.1	123441336	uncharacterized LOC123441336
sbi-r.1	8085127	uncharacterized LOC8085127
bdi-r.1	100839304	uncharacterized LOC100839304

Top 50 coexpressed genes to 7488172 (ppo-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 7488172 (ppo-u.5 coexpression data)

CoexMap"7488172"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0005515 [list] [network] protein binding

(4916 genes)

IEA

Protein

XP_002313475.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1

(predict for XP_002313475.3)

Subcellular
localization
TargetP

chlo 9

(predict for XP_002313475.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ppo-u.5 for 7488172	ppo-r.4 for 7488172	ppo-m.4 for 7488172	ppo-u.5 for 7476829	ppo-u.5 for 7460272	ppo-u.5 for 7486653	gma-u.5 for 100818661	gma-u.5 for 100814178	gma-u.5 for 100812051	mtr-u.5 for 11432905	mtr-u.5 for 11425035	ath-u.5 for AT2G26920	ath-u.5 for AT5G12120	bra-r.6 for 103850814	bra-r.6 for 103855955	bra-r.6 for 103846666	vvi-u.5 for 100249621	vvi-u.5 for 100241032	ghi-r.1 for 107959287	ghi-r.1 for 107944807	ghi-r.1 for 107939465	bna-r.1 for 125584065	bna-r.1 for 106424604	bna-r.1 for BNAA03G03790D	cit-r.1 for 102631456	sly-u.5 for 101244382	sly-u.5 for 101267483	sot-r.1 for 102592401	sot-r.1 for 102591842	nta-r.1 for 107759615	nta-r.1 for 107809605	nta-r.1 for 107770899	osa-u.5 for 4338769	zma-u.5 for 100382598	zma-u.5 for 100383949	tae-r.2 for 123132486	tae-r.2 for 123055380	tae-r.2 for 123181993	hvu-r.1 for 123441336	sbi-r.1 for 8085127	bdi-r.1 for 100839304

Ortholog

Ortholog ID: 3775

Species

ppo

gma

mtr

ath

bra

vvi

ghi

bna

cit

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

uncharacterized LOC7488172

uncharacterized LOC7476829

uncharacterized LOC7460272

uncharacterized LOC100814178

uncharacterized LOC100812051

uncharacterized LOC100802602

uncharacterized LOC11432905

uncharacterized LOC11425035

Ubiquitin-associated/translation elongation factor EF1B protein

uncharacterized LOC103850814

uncharacterized LOC103855955

uncharacterized LOC103846666

uncharacterized LOC100249621

uncharacterized LOC100241032

uncharacterized LOC107944807

uncharacterized LOC107939465

uncharacterized LOC121217627

uncharacterized LOC106424604

uncharacterized LOC106383792

uncharacterized BNAC02G04250D

uncharacterized LOC102631456

uncharacterized LOC101244382

uncharacterized LOC101267483

uncharacterized LOC102592401

uncharacterized LOC102591842

uncharacterized LOC107809605

uncharacterized LOC107770899

uncharacterized LOC107798898

uncharacterized LOC4338769

uncharacterized LOC100382598

Ubiquitin-associated/translation elongation factor EF1B protein

uncharacterized LOC123132486

uncharacterized LOC123055380

uncharacterized LOC123181993

uncharacterized LOC123441336

uncharacterized LOC8085127

uncharacterized LOC100839304

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00785	Lipoic acid metabolism	3
ppo01240	Biosynthesis of cofactors	2
ppo00010	Glycolysis / Gluconeogenesis	2
ppo00020	Citrate cycle (TCA cycle)	2
ppo00620	Pyruvate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04120	Ubiquitin mediated proteolysis	2
mtr04016	MAPK signaling pathway - plant	2
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03022	Basal transcription factors	3
ath04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04120	Ubiquitin mediated proteolysis	2
bra03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	3
ghi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	3
ghi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00520	Amino sugar and nucleotide sugar metabolism	3
ghi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna03250	Viral life cycle - HIV-1	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00500	Starch and sucrose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	4
sly03250	Viral life cycle - HIV-1	2
sly03272	Virion - Hepatitis viruses	2
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00500	Starch and sucrose metabolism	2
sbi04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

7488172

7476829

7460272

100814178

100812051

100802602

11432905

11425035

817233

831085

103850814

103855955

103846666

100249621

100241032

107944807

107939465

121217627

106424604

106383792

106380808

102631456

101244382

101267483

102592401

102591842

107809605

107770899

107798898

4338769

100382598

100383949

123132486

123055380

123181993

123441336

8085127

100839304

The preparation time of this page was 0.3 [sec].


Species	ppo	gma	mtr	ath	bra	vvi	ghi	bna	cit	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	6	3	2	2	3	2	3	3	1	2	2	3	1	2	3	1	1	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 7488172 (ppo-u.5 coexpression data)

Top 50 enrichment test to 7488172 (ppo-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**