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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7489107   pentatricopeptide repeat-containing protein At4g21300 
 ppo-r.4   7489107   pentatricopeptide repeat-containing protein At4g21300 
 ppo-m.4   7489107   pentatricopeptide repeat-containing protein At4g21300 
 gma-u.5   100812437   pentatricopeptide repeat-containing protein At4g21300 
 gma-u.5   100806592   pentatricopeptide repeat-containing protein At4g21300 
 mtr-u.5   11411158   pentatricopeptide repeat-containing protein At4g21300 
 ath-u.5   AT4G21300   Tetratricopeptide repeat (TPR)-like superfamily protein 
 vvi-u.5   100264679   pentatricopeptide repeat-containing protein At4g21300 
 sly-u.5   101244251   pentatricopeptide repeat-containing protein 
 osa-u.5   4334314   pentatricopeptide repeat-containing protein At4g21300 
 zma-u.5   103625830   pentatricopeptide repeat-containing protein At4g21300 

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Top 50 coexpressed genes to 7489107 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7489107 (ppo-u.5 coexpression data)

CoexMap"7489107"


ppoLOC7489107 | Entrez gene ID : 7489107    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009451 [list] [network] RNA modification  (384 genes)  IEA  
GO CC
GO MF
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0005515 [list] [network] protein binding  (4916 genes)  IEA  
Protein XP_002317690.3 [sequence] [blastp]
XP_024436923.1 [sequence] [blastp]
XP_024436924.1 [sequence] [blastp]
XP_024436925.1 [sequence] [blastp]
XP_024436926.1 [sequence] [blastp]
XP_024436927.1 [sequence] [blastp]
XP_024436928.1 [sequence] [blastp]
XP_024436930.1 [sequence] [blastp]
XP_024436931.1 [sequence] [blastp]
XP_024436932.1 [sequence] [blastp]
XP_024436933.1 [sequence] [blastp]
XP_024436935.1 [sequence] [blastp]
XP_024436936.1 [sequence] [blastp]
XP_024436937.1 [sequence] [blastp]
XP_024436938.1 [sequence] [blastp]
XP_024436939.1 [sequence] [blastp]
XP_024436940.1 [sequence] [blastp]
XP_052301642.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_002317690.3)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436923.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436924.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436925.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436926.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436927.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436928.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436930.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436931.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436932.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436933.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436935.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436936.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436937.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436938.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436939.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_024436940.1)
nucl 4,  chlo 3,  mito 3,  chlo_mito 3  (predict for XP_052301642.1)
Subcellular
localization
TargetP
other 3,  mito 3  (predict for XP_002317690.3)
other 3,  mito 3  (predict for XP_024436923.1)
other 3,  mito 3  (predict for XP_024436924.1)
other 3,  mito 3  (predict for XP_024436925.1)
other 3,  mito 3  (predict for XP_024436926.1)
other 3,  mito 3  (predict for XP_024436927.1)
other 3,  mito 3  (predict for XP_024436928.1)
other 3,  mito 3  (predict for XP_024436930.1)
other 3,  mito 3  (predict for XP_024436931.1)
other 3,  mito 3  (predict for XP_024436932.1)
other 3,  mito 3  (predict for XP_024436933.1)
other 3,  mito 3  (predict for XP_024436935.1)
other 3,  mito 3  (predict for XP_024436936.1)
other 3,  mito 3  (predict for XP_024436937.1)
other 3,  mito 3  (predict for XP_024436938.1)
other 3,  mito 3  (predict for XP_024436939.1)
other 3,  mito 3  (predict for XP_024436940.1)
other 3,  mito 3  (predict for XP_052301642.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7489107

.
ppo-r.4
for
7489107

.
ppo-m.4
for
7489107

.
gma-u.5
for
100812437

.
gma-u.5
for
100806592

.
mtr-u.5
for
11411158

.
ath-u.5
for
AT4G21300

.
vvi-u.5
for
100264679

.
sly-u.5
for
101244251

.
osa-u.5
for
4334314

.
zma-u.5
for
103625830

.


Ortholog ID: 10200
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol AT4G21300 LOC100812437 LOC100806592 LOC101244251 LOC4334314 LOC103625830 LOC103858936 LOC100264679 LOC7489107 LOC11411158 LOC123113516 LOC123123047 LOC123397188 LOC107951285 LOC107910649 LOC106406672 LOC106438307 LOC8083933 LOC102583979 LOC102627502 LOC104581838 LOC107774047 LOC107831147
Function* Tetratricopeptide repeat (TPR)-like superfamily protein pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300-like pentatricopeptide repeat-containing protein At4g21300-like pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300 pentatricopeptide repeat-containing protein At4g21300-like pentatricopeptide repeat-containing protein At4g21300-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00100 Steroid biosynthesis 8
sly00280 Valine, leucine and isoleucine degradation 2
sly00650 Butanoate metabolism 2
sly00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 4
tae03020 RNA polymerase 4
tae03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00970 Aminoacyl-tRNA biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827878 100812437 100806592 101244251 4334314 103625830 103858936 100264679 7489107 11411158 123113516 123123047 123397188 107951285 107910649 106406672 106438307 8083933 102583979 102627502 104581838 107774047 107831147
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