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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7490962   uncharacterized LOC7490962 
 ppo-r.4   7490962   uncharacterized LOC7490962 
 ppo-m.4   7490962   uncharacterized LOC7490962 
 gma-u.5   100784991   uncharacterized LOC100784991 
 gma-u.5   100781761   lys-63-specific deubiquitinase BRCC36 
 mtr-u.5   11434784   lys-63-specific deubiquitinase BRCC36 
 ath-u.5   BRCC36B   Mov34/MPN/PAD-1 family protein 
 ath-u.5   BRCC36A   Mov34/MPN/PAD-1 family protein 
 vvi-u.5   100253140   uncharacterized LOC100253140 
 sly-u.5   101265551   uncharacterized LOC101265551 
 osa-u.5   4339481   uncharacterized LOC4339481 
 zma-u.5   100283593   mov34/MPN/PAD-1 family protein 

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Top 50 coexpressed genes to 7490962 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7490962 (ppo-u.5 coexpression data)

CoexMap"7490962"


ppoLOC7490962 | Entrez gene ID : 7490962    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03440 [list] [network] Homologous recombination (53 genes)
GO BP
GO:0006302 [list] [network] double-strand break repair  (102 genes)  IEA  
GO CC
GO:0070552 [list] [network] BRISC complex  (4 genes)  IEA  
GO:0070531 [list] [network] BRCA1-A complex  (6 genes)  IEA  
GO MF
GO:0031593 [list] [network] polyubiquitin modification-dependent protein binding  (30 genes)  IEA  
GO:0004843 [list] [network] cysteine-type deubiquitinase activity  (76 genes)  IEA  
GO:0008237 [list] [network] metallopeptidase activity  (109 genes)  IEA  
Protein XP_052305425.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cyto 3,  nucl_plas 3  (predict for XP_052305425.1)
Subcellular
localization
TargetP
scret 7,  other 6  (predict for XP_052305425.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7490962

.
ppo-r.4
for
7490962

.
ppo-m.4
for
7490962

.
gma-u.5
for
100784991

.
gma-u.5
for
100781761

.
mtr-u.5
for
11434784

.
ath-u.5
for
BRCC36B

.
ath-u.5
for
BRCC36A

.
vvi-u.5
for
100253140

.
sly-u.5
for
101265551

.
osa-u.5
for
4339481

.
zma-u.5
for
100283593

.


Ortholog ID: 9452
Species ath ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol BRCC36A BRCC36B LOC100784991 LOC100781761 LOC101265551 LOC4339481 LOC100283593 LOC103830424 LOC100253140 LOC7490962 LOC11434784 LOC123143018 LOC123065475 LOC123448052 LOC107901767 LOC107961695 LOC106347023 LOC106353359 CHLRE_11g475400v5 LOC8068998 LOC102592487 LOC102613692 LOC100822119 LOC107831121 LOC107826806
Function* Mov34/MPN/PAD-1 family protein Mov34/MPN/PAD-1 family protein uncharacterized LOC100784991 lys-63-specific deubiquitinase BRCC36 uncharacterized LOC101265551 uncharacterized LOC4339481 mov34/MPN/PAD-1 family protein uncharacterized LOC103830424 uncharacterized LOC100253140 uncharacterized LOC7490962 lys-63-specific deubiquitinase BRCC36 lys-63-specific deubiquitinase BRCC36 lys-63-specific deubiquitinase BRCC36 lys-63-specific deubiquitinase BRCC36-like lys-63-specific deubiquitinase BRCC36 lys-63-specific deubiquitinase BRCC36 26S proteasome non-ATPase regulatory subunit 14 lys-63-specific deubiquitinase BRCC36 uncharacterized protein lys-63-specific deubiquitinase BRCC36 lys-63-specific deubiquitinase BRCC36-like uncharacterized LOC102613692 lys-63-specific deubiquitinase BRCC36 uncharacterized LOC107831121 uncharacterized LOC107826806
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00062 Fatty acid elongation 2
ath01040 Biosynthesis of unsaturated fatty acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
ath03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 5
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00052 Galactose metabolism 4
zma00500 Starch and sucrose metabolism 4
zma00520 Amino sugar and nucleotide sugar metabolism 4
zma01250 Biosynthesis of nucleotide sugars 4
zma01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 3
bra03040 Spliceosome 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00541 Biosynthesis of various nucleotide sugars 2
ppo01250 Biosynthesis of nucleotide sugars 2
ppo01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 4
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03440 Homologous recombination 4
ghi03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04136 Autophagy - other 6
bna04382 Cornified envelope formation 6
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 6
bna04136 Autophagy - other 6
bna04382 Cornified envelope formation 6
bna03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00760 Nicotinate and nicotinamide metabolism 4
nta03440 Homologous recombination 2
nta04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03440 Homologous recombination 2
nta00760 Nicotinate and nicotinamide metabolism 2
nta04146 Peroxisome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 844361 819866 100784991 100781761 101265551 4339481 100283593 103830424 100253140 7490962 11434784 123143018 123065475 123448052 107901767 107961695 106347023 106353359 5727547 8068998 102592487 102613692 100822119 107831121 107826806
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