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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7491906   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ppo-r.4   7491906   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ppo-m.4   7491906   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 gma-u.5   100814084   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 gma-u.5   100812280   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 mtr-u.5   11409952   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 ath-u.5   CLPP4   CLP protease P4 
 vvi-u.5   100254000   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 sly-u.5   101267919   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 osa-u.5   4349523   ATP-dependent Clp protease proteolytic subunit 4, chloroplastic 
 zma-u.5   100272517   ATP-dependent Clp protease proteolytic subunit 

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Top 50 coexpressed genes to 7491906 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7491906 (ppo-u.5 coexpression data)

CoexMap"7491906"


ppoLOC7491906 | Entrez gene ID : 7491906    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006515 [list] [network] protein quality control for misfolded or incompletely synthesized proteins  (20 genes)  IEA  
GO CC
GO:0009368 [list] [network] endopeptidase Clp complex  (14 genes)  IEA  
GO MF
GO:0051117 [list] [network] ATPase binding  (20 genes)  IEA  
GO:0004176 [list] [network] ATP-dependent peptidase activity  (40 genes)  IEA  
GO:0004252 [list] [network] serine-type endopeptidase activity  (144 genes)  IEA  
Protein XP_002304381.2 [sequence] [blastp]
XP_006385712.1 [sequence] [blastp]
XP_024452755.1 [sequence] [blastp]
XP_052307289.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  nucl 1,  mito 1  (predict for XP_002304381.2)
chlo 9,  nucl 1,  mito 1  (predict for XP_006385712.1)
chlo 9,  nucl 1,  mito 1  (predict for XP_024452755.1)
chlo 9,  nucl 1,  mito 1  (predict for XP_052307289.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002304381.2)
chlo 9  (predict for XP_006385712.1)
chlo 9  (predict for XP_024452755.1)
chlo 9  (predict for XP_052307289.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7491906

.
ppo-r.4
for
7491906

.
ppo-m.4
for
7491906

.
gma-u.5
for
100814084

.
gma-u.5
for
100812280

.
mtr-u.5
for
11409952

.
ath-u.5
for
CLPP4

.
vvi-u.5
for
100254000

.
sly-u.5
for
101267919

.
osa-u.5
for
4349523

.
zma-u.5
for
100272517

.


Ortholog ID: 10361
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol CLPP4 LOC100814084 LOC100812280 LOC101267919 LOC4349523 LOC100272517 LOC103827802 LOC100254000 LOC7491906 LOC11409952 LOC123126827 LOC123181518 LOC123437162 LOC107930114 LOC107900718 LOC106375386 LOC106386411 CHLRE_12g500950v5 LOC8055115 LOC102605723 LOC102625246 LOC100824309 LOC107765360 LOC107785710
Function* CLP protease P4 ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic uncharacterized protein ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic ATP-dependent Clp protease proteolytic subunit 4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
zma00300 Lysine biosynthesis 2
zma00470 D-Amino acid metabolism 2
zma01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00230 Purine metabolism 2
ppo00240 Pyrimidine metabolism 2
ppo01232 Nucleotide metabolism 2
ppo00290 Valine, leucine and isoleucine biosynthesis 2
ppo00660 C5-Branched dibasic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 7
mtr01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00561 Glycerolipid metabolism 3
tae00564 Glycerophospholipid metabolism 3
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 2
tae00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi03010 Ribosome 2
ghi00730 Thiamine metabolism 2
ghi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01240 Biosynthesis of cofactors 4
ghi03010 Ribosome 2
ghi00730 Thiamine metabolism 2
ghi00053 Ascorbate and aldarate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 2
bna00906 Carotenoid biosynthesis 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00480 Glutathione metabolism 2
bna00906 Carotenoid biosynthesis 2
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00620 Pyruvate metabolism 4
nta00270 Cysteine and methionine metabolism 2
nta00920 Sulfur metabolism 2
nta04122 Sulfur relay system 2
nta00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00750 Vitamin B6 metabolism 2
nta01240 Biosynthesis of cofactors 2
nta00620 Pyruvate metabolism 2
nta00970 Aminoacyl-tRNA biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834575 100814084 100812280 101267919 4349523 100272517 103827802 100254000 7491906 11409952 123126827 123181518 123437162 107930114 107900718 106375386 106386411 5716386 8055115 102605723 102625246 100824309 107765360 107785710
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