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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7494234   probable 26S proteasome non-ATPase regulatory subunit 3 
 ppo-r.4   7494234   probable 26S proteasome non-ATPase regulatory subunit 3 
 ppo-m.4   7494234   probable 26S proteasome non-ATPase regulatory subunit 3 
 ppo-u.5   7470413   probable 26S proteasome non-ATPase regulatory subunit 3 
 gma-u.5   100819526   probable 26S proteasome non-ATPase regulatory subunit 3 
 gma-u.5   100814379   probable 26S proteasome non-ATPase regulatory subunit 3 
 gma-u.5   100787034   probable 26S proteasome non-ATPase regulatory subunit 3 
 mtr-u.5   11417232   probable 26S proteasome non-ATPase regulatory subunit 3 
 mtr-u.5   11439915   probable 26S proteasome non-ATPase regulatory subunit 3 
 ath-u.5   EMB2719   PAM domain (PCI/PINT associated module) protein 
 ath-u.5   AT1G75990   PAM domain (PCI/PINT associated module) protein 
 vvi-u.5   100264130   probable 26S proteasome non-ATPase regulatory subunit 3 
 vvi-u.5   100255691   probable 26S proteasome non-ATPase regulatory subunit 3 
 sly-u.5   101244534   PCI superfamily protein 
 osa-u.5   4347735   probable 26S proteasome non-ATPase regulatory subunit 3 
 osa-u.5   4346252   probable 26S proteasome non-ATPase regulatory subunit 3 
 zma-u.5   100282792   26S proteasome non-ATPase regulatory subunit 3 
 zma-u.5   100283005   uncharacterized LOC100283005 

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Top 50 coexpressed genes to 7494234 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7494234 (ppo-u.5 coexpression data)

CoexMap"7494234"


ppoLOC7494234 | Entrez gene ID : 7494234    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 4 3 2 2 2 1 2 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03050 [list] [network] Proteasome (82 genes)
GO BP
GO:0042176 [list] [network] regulation of protein catabolic process  (61 genes)  IEA  
GO:0006511 [list] [network] ubiquitin-dependent protein catabolic process  (340 genes)  IEA  
GO CC
GO:0008541 [list] [network] proteasome regulatory particle, lid subcomplex  (20 genes)  IEA  
GO:0000502 [list] [network] proteasome complex  (77 genes)  IEA  
GO MF
GO:0030234 [list] [network] enzyme regulator activity  (564 genes)  IEA  
Protein XP_002312950.3 [sequence] [blastp]
Subcellular
localization
wolf
chlo 3,  nucl 2,  vacu 2,  cysk_nucl 1,  plas 1  (predict for XP_002312950.3)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for XP_002312950.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7494234

.
ppo-r.4
for
7494234

.
ppo-m.4
for
7494234

.
ppo-u.5
for
7470413

.
gma-u.5
for
100819526

.
gma-u.5
for
100814379

.
gma-u.5
for
100787034

.
mtr-u.5
for
11417232

.
mtr-u.5
for
11439915

.
ath-u.5
for
EMB2719

.
ath-u.5
for
AT1G75990

.
vvi-u.5
for
100264130

.
vvi-u.5
for
100255691

.
sly-u.5
for
101244534

.
osa-u.5
for
4347735

.
osa-u.5
for
4346252

.
zma-u.5
for
100282792

.
zma-u.5
for
100283005

.


Ortholog ID: 4464
Species ath ath gma gma sly osa osa zma zma bra vvi vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi cit bdi bdi nta nta
Symbol AT1G75990 EMB2719 LOC100814379 LOC100819526 LOC101244534 LOC4347735 LOC4346252 LOC100283005 LOC100282792 LOC103832045 LOC100264130 LOC100255691 LOC7470413 LOC7494234 LOC11439915 LOC11417232 LOC123098420 LOC123104638 LOC123400202 LOC123409228 LOC107945069 LOC107922352 LOC106406159 LOC106421645 CHLRE_06g275650v5 LOC8057843 LOC102622301 LOC100838341 LOC100840664 LOC107767362 LOC107767363
Function* PAM domain (PCI/PINT associated module) protein PAM domain (PCI/PINT associated module) protein probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 PCI superfamily protein probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 uncharacterized LOC100283005 26S proteasome non-ATPase regulatory subunit 3 26S proteasome non-ATPase regulatory subunit 3 homolog B probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 26S proteasome non-ATPase regulatory subunit 3 homolog B 26S proteasome non-ATPase regulatory subunit 3 homolog B uncharacterized protein probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3 putative 26S proteasome non-ATPase regulatory subunit 3 probable 26S proteasome non-ATPase regulatory subunit 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath01250 Biosynthesis of nucleotide sugars 3
ath04141 Protein processing in endoplasmic reticulum 2
ath00541 Biosynthesis of various nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03050 Proteasome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 7
gma04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 2
gma00020 Citrate cycle (TCA cycle) 2
gma00270 Cysteine and methionine metabolism 2
gma00566 Sulfoquinovose metabolism 2
gma00620 Pyruvate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03050 Proteasome 15
sly04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03050 Proteasome 9
zma00020 Citrate cycle (TCA cycle) 3
zma01200 Carbon metabolism 3
zma01210 2-Oxocarboxylic acid metabolism 3
zma01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03050 Proteasome 15
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03050 Proteasome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo03050 Proteasome 3
ppo03013 Nucleocytoplasmic transport 2
ppo04148 Efferocytosis 2
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 8
mtr03015 mRNA surveillance pathway 4
mtr03013 Nucleocytoplasmic transport 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03050 Proteasome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03050 Proteasome 8
tae04142 Lysosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04141 Protein processing in endoplasmic reticulum 3
hvu03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 8
ghi03015 mRNA surveillance pathway 2
ghi03460 Fanconi anemia pathway 2
ghi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03050 Proteasome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 13
bna03060 Protein export 2
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03050 Proteasome 12
bna00010 Glycolysis / Gluconeogenesis 2
bna00710 Carbon fixation by Calvin cycle 2
bna01200 Carbon metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03050 Proteasome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 8
sbi00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03050 Proteasome 11
nta00100 Steroid biosynthesis 2
nta04141 Protein processing in endoplasmic reticulum 2
nta04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843931 838609 100814379 100819526 101244534 4347735 4346252 100283005 100282792 103832045 100264130 100255691 7470413 7494234 11439915 11417232 123098420 123104638 123400202 123409228 107945069 107922352 106406159 106421645 5721750 8057843 102622301 100838341 100840664 107767362 107767363
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