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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7494292   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 ppo-r.4   7494292   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 gma-u.5   100783494   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 mtr-u.5   11418223   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 ath-u.5   AT4G38890   FMN-linked oxidoreductases superfamily protein 
 vvi-u.5   100262408   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 sly-u.5   101268622   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 osa-u.5   4334955   tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 
 zma-u.5   100279244   uncharacterized LOC100279244 

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Top 50 coexpressed genes to 7494292 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7494292 (ppo-u.5 coexpression data)

CoexMap"7494292"


ppoLOC7494292 | Entrez gene ID : 7494292    
Species ppo gma mtr ath vvi sly osa zma cre ghi cit hvu bdi sot bra sbi tae nta bna
Paralog 2 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0008033 [list] [network] tRNA processing  (110 genes)  IEA  
GO CC
GO MF
GO:0017150 [list] [network] tRNA dihydrouridine synthase activity  (4 genes)  IEA  
GO:0050660 [list] [network] flavin adenine dinucleotide binding  (187 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
GO:0046872 [list] [network] metal ion binding  (2135 genes)  IEA  
Protein XP_002313751.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 9,  cyto 1,  vacu 1  (predict for XP_002313751.3)
Subcellular
localization
TargetP
chlo 6,  other 4  (predict for XP_002313751.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7494292

.
ppo-r.4
for
7494292

.
gma-u.5
for
100783494

.
mtr-u.5
for
11418223

.
ath-u.5
for
AT4G38890

.
vvi-u.5
for
100262408

.
sly-u.5
for
101268622

.
osa-u.5
for
4334955

.
zma-u.5
for
100279244

.


Ortholog ID: 10910
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol AT4G38890 LOC100783494 LOC101268622 LOC4334955 LOC100279244 LOC103860413 LOC100262408 LOC7494292 LOC11418223 LOC123043074 LOC123050965 LOC123431472 LOC107920288 LOC107903715 LOC106438752 LOC106434003 CHLRE_04g229948v5 LOC8080272 LOC102598558 LOC102621230 LOC100840789 LOC107782150 LOC107766363
Function* FMN-linked oxidoreductases superfamily protein tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like uncharacterized LOC100279244 tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like uncharacterized protein tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 3
gma00250 Alanine, aspartate and glutamate metabolism 2
gma01240 Biosynthesis of cofactors 2
gma00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 4
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00010 Glycolysis / Gluconeogenesis 3
tae00020 Citrate cycle (TCA cycle) 3
tae00620 Pyruvate metabolism 3
tae00785 Lipoic acid metabolism 3
tae01200 Carbon metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00230 Purine metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
ghi01240 Biosynthesis of cofactors 2
ghi00230 Purine metabolism 2
ghi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 7
sbi03020 RNA polymerase 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 4
sot04141 Protein processing in endoplasmic reticulum 3
sot03008 Ribosome biogenesis in eukaryotes 2
sot03022 Basal transcription factors 2
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 5
bdi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830044 100783494 101268622 4334955 100279244 103860413 100262408 7494292 11418223 123043074 123050965 123431472 107920288 107903715 106438752 106434003 5717942 8080272 102598558 102621230 100840789 107782150 107766363
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