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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7494613   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 ppo-r.4   7494613   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 ppo-u.5   112327632   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 gma-u.5   100777875   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 mtr-u.5   11416550   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 mtr-u.5   11409428   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 mtr-u.5   11413490   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 ath-u.5   NCED4   nine-cis-epoxycarotenoid dioxygenase 4 
 vvi-u.5   100252859   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 vvi-u.5   100251100   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 sly-u.5   101250828   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 sly-u.5   101250535   probable carotenoid cleavage dioxygenase 4, chloroplastic 
 osa-u.5   4352125   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like 
 osa-u.5   4330451   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like 
 zma-u.5   100501454   nine-cis-epoxycarotenoid dioxygenase6 
 zma-u.5   103627610   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 

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Top 50 coexpressed genes to 7494613 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7494613 (ppo-u.5 coexpression data)

CoexMap"7494613"


ppoLOC7494613 | Entrez gene ID : 7494613    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 1 3 1 2 2 2 2 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00906 [list] [network] Carotenoid biosynthesis (54 genes)
GO BP
GO:0016121 [list] [network] carotene catabolic process  (21 genes)  IEA  
GO CC
GO:0009570 [list] [network] chloroplast stroma  (136 genes)  IEA  
GO MF
GO:0010436 [list] [network] carotenoid dioxygenase activity  (21 genes)  IEA  
Protein XP_002326037.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9,  mito 1  (predict for XP_002326037.2)
Subcellular
localization
TargetP
chlo 8  (predict for XP_002326037.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7494613

.
ppo-r.4
for
7494613

.
ppo-u.5
for
112327632

.
gma-u.5
for
100777875

.
mtr-u.5
for
11416550

.
mtr-u.5
for
11409428

.
mtr-u.5
for
11413490

.
ath-u.5
for
NCED4

.
vvi-u.5
for
100252859

.
vvi-u.5
for
100251100

.
sly-u.5
for
101250828

.
sly-u.5
for
101250535

.
osa-u.5
for
4352125

.
osa-u.5
for
4330451

.
zma-u.5
for
100501454

.
zma-u.5
for
103627610

.


Ortholog ID: 6042
Species ath gma sly sly osa osa zma zma bra bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna sbi sot cit bdi nta nta
Symbol NCED4 LOC100777875 LOC101250828 LOC101250535 LOC4352125 LOC4330451 LOC103627610 LOC100501454 LOC103857159 LOC103834110 LOC100252859 LOC100251100 LOC112327632 LOC7494613 LOC11409428 LOC11416550 LOC123128116 LOC123137906 LOC123401792 LOC107946820 LOC107947364 LOC125610300 LOC106360920 LOC110434687 LOC102581808 LOC102612995 LOC100845393 LOC107767418 LOC107823578
Function* nine-cis-epoxycarotenoid dioxygenase 4 probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic nine-cis-epoxycarotenoid dioxygenase6 probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic-like probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic zeaxanthin 7,8(7',8')-cleavage dioxygenase, chromoplastic-like probable carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic putative carotenoid cleavage dioxygenase 4, chloroplastic probable carotenoid cleavage dioxygenase 4, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00943 Isoflavonoid biosynthesis 2
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00052 Galactose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi02010 ABC transporters 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00195 Photosynthesis 7
ppo00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00630 Glyoxylate and dicarboxylate metabolism 3
ppo01200 Carbon metabolism 3
ppo00195 Photosynthesis 2
ppo00020 Citrate cycle (TCA cycle) 2
ppo00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00860 Porphyrin metabolism 4
mtr00906 Carotenoid biosynthesis 3
mtr04082 Neuroactive ligand signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00592 alpha-Linolenic acid metabolism 3
tae00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00195 Photosynthesis 4
tae00906 Carotenoid biosynthesis 3
tae00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00730 Thiamine metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 2
cit04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00908 Zeatin biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00906 Carotenoid biosynthesis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827655 100777875 101250828 101250535 4352125 4330451 103627610 100501454 103857159 103834110 100252859 100251100 112327632 7494613 11409428 11416550 123128116 123137906 123401792 107946820 107947364 125610300 106360920 110434687 102581808 102612995 100845393 107767418 107823578
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