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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7494729   DEAD-box ATP-dependent RNA helicase 42 
 ppo-r.4   7494729   DEAD-box ATP-dependent RNA helicase 42 
 ppo-m.4   7494729   DEAD-box ATP-dependent RNA helicase 42 
 ppo-u.5   7471740   DEAD-box ATP-dependent RNA helicase 42 
 gma-u.5   100784306   DEAD-box ATP-dependent RNA helicase 42 
 gma-u.5   100806467   DEAD-box ATP-dependent RNA helicase 42 
 mtr-u.5   11418819   DEAD-box ATP-dependent RNA helicase 42 
 ath-u.5   AT1G20920   P-loop containing nucleoside triphosphate hydrolases superfamily protein 
 vvi-u.5   100262258   DEAD-box ATP-dependent RNA helicase 42 
 osa-u.5   4344716   DEAD-box ATP-dependent RNA helicase 42-like 
 osa-u.5   4344682   DEAD-box ATP-dependent RNA helicase 45 
 zma-u.5   100381523   uncharacterized LOC100381523 

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Top 50 coexpressed genes to 7494729 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7494729 (ppo-u.5 coexpression data)

CoexMap"7494729"


ppoLOC7494729 | Entrez gene ID : 7494729    
Species ppo gma mtr ath vvi osa zma sly sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 4 2 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03040 [list] [network] Spliceosome (338 genes)
GO BP
GO:0000398 [list] [network] mRNA splicing, via spliceosome  (213 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0003724 [list] [network] RNA helicase activity  (68 genes)  IEA  
GO:0005524 [list] [network] ATP binding  (2559 genes)  IEA  
GO:0003676 [list] [network] nucleic acid binding  (4002 genes)  IEA  
Protein XP_024457957.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 3  (predict for XP_024457957.2)
Subcellular
localization
TargetP
other 8  (predict for XP_024457957.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7494729

.
ppo-r.4
for
7494729

.
ppo-m.4
for
7494729

.
ppo-u.5
for
7471740

.
gma-u.5
for
100784306

.
gma-u.5
for
100806467

.
mtr-u.5
for
11418819

.
ath-u.5
for
AT1G20920

.
vvi-u.5
for
100262258

.
osa-u.5
for
4344716

.
osa-u.5
for
4344682

.
zma-u.5
for
100381523

.


Ortholog ID: 6258
Species ath gma gma osa osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna cre sbi sbi sot cit bdi nta nta
Symbol AT1G20920 LOC100806467 LOC100784306 LOC4344682 LOC4344716 LOC100381523 LOC103870532 LOC103872879 LOC100262258 LOC7494729 LOC7471740 LOC11418819 LOC123156230 LOC123168111 LOC123413157 LOC107942493 LOC107934396 LOC106347293 CHLRE_16g676400v5 LOC8074046 LOC8080853 LOC102600584 LOC102628811 LOC100846703 LOC142161616 LOC142161659
Function* P-loop containing nucleoside triphosphate hydrolases superfamily protein DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 45 DEAD-box ATP-dependent RNA helicase 42-like uncharacterized LOC100381523 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42-like DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 uncharacterized protein DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 42-like DEAD-box ATP-dependent RNA helicase 42 DEAD-box ATP-dependent RNA helicase 45-like DEAD-box ATP-dependent RNA helicase 45-like
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 2
osa03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04712 Circadian rhythm - plant 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 5
ppo03013 Nucleocytoplasmic transport 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 5
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 7
cre03018 RNA degradation 3
cre03020 RNA polymerase 2
cre03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 838685 100806467 100784306 4344682 4344716 100381523 103870532 103872879 100262258 7494729 7471740 11418819 123156230 123168111 123413157 107942493 107934396 106347293 5721481 8074046 8080853 102600584 102628811 100846703 142161616 142161659
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