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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7495838   DNA repair protein RAD50 
 ppo-r.4   7495838   DNA repair protein RAD50 
 ppo-m.4   7495838   DNA repair protein RAD50 
 gma-u.5   100818545   DNA repair protein RAD50 
 mtr-u.5   11435676   DNA repair protein RAD50 
 ath-u.5   RAD50   DNA repair-recombination protein (RAD50) 
 vvi-u.5   100243413   DNA repair protein RAD50 
 sly-u.5   101256382   DNA repair protein RAD50 
 osa-u.5   4329409   DNA repair protein RAD50 
 zma-u.5   103653563   DNA repair protein RAD50 

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Top 50 coexpressed genes to 7495838 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7495838 (ppo-u.5 coexpression data)

CoexMap"7495838"


ppoLOC7495838 | Entrez gene ID : 7495838    
Species ppo gma mtr ath vvi sly osa zma hvu sot tae nta bra cit ghi bna bdi sbi cre
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03440 [list] [network] Homologous recombination (53 genes)
pop03450 [list] [network] Non-homologous end-joining (7 genes)
GO BP
GO:0000722 [list] [network] telomere maintenance via recombination  (4 genes)  IEA  
GO:0007004 [list] [network] telomere maintenance via telomerase  (6 genes)  IEA  
GO:0070192 [list] [network] chromosome organization involved in meiotic cell cycle  (24 genes)  IEA  
GO:0006302 [list] [network] double-strand break repair  (102 genes)  IEA  
GO CC
GO:0030870 [list] [network] Mre11 complex  (3 genes)  IEA  
GO:0000794 [list] [network] condensed nuclear chromosome  (13 genes)  IEA  
GO:0005634 [list] [network] nucleus  (3662 genes)  IEA  
GO MF
GO:0051880 [list] [network] G-quadruplex DNA binding  (1 genes)  IEA  
GO:0043047 [list] [network] single-stranded telomeric DNA binding  (5 genes)  IEA  
GO:0003691 [list] [network] double-stranded telomeric DNA binding  (7 genes)  IEA  
GO:0016887 [list] [network] ATP hydrolysis activity  (550 genes)  IEA  
Protein XP_002300148.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  mito 1,  vacu 1  (predict for XP_002300148.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002300148.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7495838

.
ppo-r.4
for
7495838

.
ppo-m.4
for
7495838

.
gma-u.5
for
100818545

.
mtr-u.5
for
11435676

.
ath-u.5
for
RAD50

.
vvi-u.5
for
100243413

.
sly-u.5
for
101256382

.
osa-u.5
for
4329409

.
zma-u.5
for
103653563

.


Ortholog ID: 10689
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta nta
Symbol RAD50 LOC100818545 LOC101256382 LOC4329409 LOC103653563 LOC103857408 LOC100243413 LOC7495838 LOC11435676 LOC123110672 LOC123102504 LOC123399737 LOC107934476 LOC107939147 LOC106387982 LOC106437707 CHLRE_03g192550v5 LOC8056059 LOC102580839 LOC102616752 LOC100845007 LOC107797609 LOC107800461
Function* DNA repair-recombination protein (RAD50) DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50-like uncharacterized protein DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50 DNA repair protein RAD50-like DNA repair protein RAD50
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03013 Nucleocytoplasmic transport 4
ath03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03020 RNA polymerase 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
sly04120 Ubiquitin mediated proteolysis 2
sly03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 2
osa03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03440 Homologous recombination 2
zma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 7
bra03040 Spliceosome 6
bra03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03440 Homologous recombination 4
vvi03018 RNA degradation 2
vvi03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03013 Nucleocytoplasmic transport 4
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03440 Homologous recombination 2
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 5
tae03440 Homologous recombination 3
tae03450 Non-homologous end-joining 3
tae03020 RNA polymerase 3
tae03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
hvu03015 mRNA surveillance pathway 2
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03082 ATP-dependent chromatin remodeling 2
ghi03440 Homologous recombination 2
ghi03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03013 Nucleocytoplasmic transport 7
bna03440 Homologous recombination 2
bna03450 Non-homologous end-joining 2
bna03420 Nucleotide excision repair 2
bna03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03440 Homologous recombination 4
bna03450 Non-homologous end-joining 4
bna03013 Nucleocytoplasmic transport 2
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03440 Homologous recombination 2
cre03450 Non-homologous end-joining 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
sbi03450 Non-homologous end-joining 2
sbi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
sot03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 2
bdi03013 Nucleocytoplasmic transport 2
bdi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 4
nta03008 Ribosome biogenesis in eukaryotes 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 817756 100818545 101256382 4329409 103653563 103857408 100243413 7495838 11435676 123110672 123102504 123399737 107934476 107939147 106387982 106437707 5718688 8056059 102580839 102616752 100845007 107797609 107800461
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