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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7496889   probable alpha-amylase 2 
 ppo-r.4   7496889   probable alpha-amylase 2 
 ppo-m.4   7496889   probable alpha-amylase 2 
 gma-u.5   100813490   alpha-amylase-like 
 gma-u.5   100793671   probable alpha-amylase 2 
 mtr-u.5   11412615   probable alpha-amylase 2 
 ath-u.5   AMY2   alpha-amylase-like 2 
 vvi-u.5   100257481   probable alpha-amylase 2 
 sly-u.5   101250886   probable alpha-amylase 2 
 osa-u.5   4335737   probable alpha-amylase 2 
 zma-u.5   100273593   uncharacterized LOC100273593 

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Top 50 coexpressed genes to 7496889 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7496889 (ppo-u.5 coexpression data)

CoexMap"7496889"


ppoLOC7496889 | Entrez gene ID : 7496889    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00500 [list] [network] Starch and sucrose metabolism (188 genes)
GO BP
GO:0005975 [list] [network] carbohydrate metabolic process  (863 genes)  IEA  
GO CC
GO MF
GO:0004556 [list] [network] alpha-amylase activity  (5 genes)  IEA  
GO:0005509 [list] [network] calcium ion binding  (301 genes)  IEA  
Protein XP_002301935.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cysk 4,  cysk_nucl 4  (predict for XP_002301935.2)
Subcellular
localization
TargetP
other 8  (predict for XP_002301935.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7496889

.
ppo-r.4
for
7496889

.
ppo-m.4
for
7496889

.
gma-u.5
for
100813490

.
gma-u.5
for
100793671

.
mtr-u.5
for
11412615

.
ath-u.5
for
AMY2

.
vvi-u.5
for
100257481

.
sly-u.5
for
101250886

.
osa-u.5
for
4335737

.
zma-u.5
for
100273593

.


Ortholog ID: 10556
Species ath gma gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta
Symbol AMY2 LOC100793671 LOC100813490 LOC101250886 LOC4335737 LOC100273593 LOC103832061 LOC100257481 LOC7496889 LOC11412615 LOC123189113 LOC123053198 LOC123426601 LOC107938137 LOC107957617 LOC106421656 LOC106405826 CHLRE_08g362450v5 LOC8072062 AMYA1 LOC102625798 LOC100824346 LOC107780204
Function* alpha-amylase-like 2 probable alpha-amylase 2 alpha-amylase-like probable alpha-amylase 2 probable alpha-amylase 2 uncharacterized LOC100273593 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 probable alpha-amylase 2 uncharacterized protein probable alpha-amylase 2 alpha-amylase probable alpha-amylase 2 probable alpha-amylase 2 putative alpha-amylase 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00500 Starch and sucrose metabolism 2
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04136 Autophagy - other 3
osa00600 Sphingolipid metabolism 2
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03083 Polycomb repressive complex 2
bra04120 Ubiquitin mediated proteolysis 2
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00910 Nitrogen metabolism 3
ghi00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00270 Cysteine and methionine metabolism 2
bna00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre01200 Carbon metabolism 7
cre01230 Biosynthesis of amino acids 5
cre00500 Starch and sucrose metabolism 5
cre00030 Pentose phosphate pathway 5
cre00010 Glycolysis / Gluconeogenesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 6
cit00520 Amino sugar and nucleotide sugar metabolism 2
cit01250 Biosynthesis of nucleotide sugars 2
cit00564 Glycerophospholipid metabolism 2
cit00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04141 Protein processing in endoplasmic reticulum 6
nta03083 Polycomb repressive complex 4
nta04120 Ubiquitin mediated proteolysis 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843945 100793671 100813490 101250886 4335737 100273593 103832061 100257481 7496889 11412615 123189113 123053198 123426601 107938137 107957617 106421656 106405826 5721598 8072062 102577485 102625798 100824346 107780204
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