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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7496900   RNA pseudouridine synthase 2, chloroplastic 
 ppo-r.4   7496900   RNA pseudouridine synthase 2, chloroplastic 
 ppo-m.4   7496900   RNA pseudouridine synthase 2, chloroplastic 
 gma-u.5   100810383   RNA pseudouridine synthase 2, chloroplastic 
 mtr-u.5   11427408   RNA pseudouridine synthase 2, chloroplastic 
 ath-u.5   AT1G76050   Pseudouridine synthase family protein 
 vvi-u.5   100852977   RNA pseudouridine synthase 2, chloroplastic 
 sly-u.5   101246422   RNA pseudouridine synthase 2, chloroplastic 
 osa-u.5   4342081   RNA pseudouridine synthase 2, chloroplastic-like 
 zma-u.5   100272459   RNA binding protein 

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Top 50 coexpressed genes to 7496900 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7496900 (ppo-u.5 coexpression data)

CoexMap"7496900"


ppoLOC7496900 | Entrez gene ID : 7496900    
Species ppo gma mtr ath vvi sly osa zma tae hvu ghi bdi cit bra cre sbi bna nta sot
Paralog 3 1 1 1 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0001522 [list] [network] pseudouridine synthesis  (28 genes)  IEA  
GO CC
GO MF
GO:0009982 [list] [network] pseudouridine synthase activity  (21 genes)  IEA  
GO:0003723 [list] [network] RNA binding  (1480 genes)  IEA  
Protein XP_002301949.2 [sequence] [blastp]
XP_024451595.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 2,  mito 1,  pero 1  (predict for XP_002301949.2)
cyto 6,  nucl 2,  mito 1,  pero 1  (predict for XP_024451595.1)
Subcellular
localization
TargetP
other 7  (predict for XP_002301949.2)
other 7  (predict for XP_024451595.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7496900

.
ppo-r.4
for
7496900

.
ppo-m.4
for
7496900

.
gma-u.5
for
100810383

.
mtr-u.5
for
11427408

.
ath-u.5
for
AT1G76050

.
vvi-u.5
for
100852977

.
sly-u.5
for
101246422

.
osa-u.5
for
4342081

.
zma-u.5
for
100272459

.


Ortholog ID: 11134
Species ath gma sly osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit bdi nta
Symbol AT1G76050 LOC100810383 LOC101246422 LOC4342081 LOC100272459 LOC103832049 LOC100852977 LOC7496900 LOC11427408 LOC123160360 LOC123149656 LOC123409561 LOC107905545 LOC107937570 LOC106421521 LOC106406421 CHLRE_02g078750v5 LOC8065000 LOC102581156 LOC102619972 LOC100824777 LOC107811616
Function* Pseudouridine synthase family protein RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic-like RNA binding protein RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic-like RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic uncharacterized protein RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic RNA pseudouridine synthase 2, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00130 Ubiquinone and other terpenoid-quinone biosynthesis 2
sly01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00061 Fatty acid biosynthesis 2
mtr01212 Fatty acid metabolism 2
mtr01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00860 Porphyrin metabolism 3
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04075 Plant hormone signal transduction 3
ghi04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 2
bna03440 Homologous recombination 2
bna03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
cre01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03020 RNA polymerase 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843937 100810383 101246422 4342081 100272459 103832049 100852977 7496900 11427408 123160360 123149656 123409561 107905545 107937570 106421521 106406421 5727258 8065000 102581156 102619972 100824777 107811616
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