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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7461764   riboflavin biosynthesis protein PYRD, chloroplastic 
 gma-u.5   100789675   riboflavin biosynthesis protein PYRD, chloroplastic 
 gma-u.5   100786393   riboflavin biosynthesis protein PYRD, chloroplastic 
 mtr-u.5   11422868   riboflavin biosynthesis protein PYRD, chloroplastic 
 ath-u.5   PyrD   Cytidine/deoxycytidylate deaminase family protein 
 vvi-u.5   100246468   riboflavin biosynthesis protein PYRD, chloroplastic 
 sly-u.5   101263546   riboflavin biosynthesis protein PYRD, chloroplastic 
 osa-u.5   9272088   riboflavin biosynthesis protein PYRD, chloroplastic 
 osa-u.5   4331409   riboflavin biosynthesis protein PYRD, chloroplastic 
 zma-u.5   100191772   riboflavin biosynthesis protein ribD 

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Top 50 coexpressed genes to 7461764 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7461764 (ppo-u.5 coexpression data)

CoexMap"7496964"


ppoLOC7496964 | Entrez gene ID : 7496964    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 1 2 1 1 1 1 2 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00740 [list] [network] Riboflavin metabolism (30 genes)
pop01240 [list] [network] Biosynthesis of cofactors (298 genes)
GO BP
GO:0009231 [list] [network] riboflavin biosynthetic process  (16 genes)  IEA  
GO CC
GO MF
GO:0008835 [list] [network] diaminohydroxyphosphoribosylaminopyrimidine deaminase activity  (3 genes)  IEA  
GO:0008270 [list] [network] zinc ion binding  (777 genes)  IEA  
Protein XP_002320789.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 5,  chlo 3,  cyto_plas 3  (predict for XP_002320789.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002320789.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7461764

.
gma-u.5
for
100789675

.
gma-u.5
for
100786393

.
mtr-u.5
for
11422868

.
ath-u.5
for
PyrD

.
vvi-u.5
for
100246468

.
sly-u.5
for
101263546

.
osa-u.5
for
9272088

.
osa-u.5
for
4331409

.
zma-u.5
for
100191772

.


Ortholog ID: 7286
Species ath gma gma sly osa osa zma bra vvi ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot cit cit bdi nta nta
Symbol PyrD LOC100789675 LOC100786393 LOC101263546 LOC9272088 LOC4331409 LOC100191772 LOC103834212 LOC100246468 LOC7461764 LOC11422868 LOC123093822 LOC123099050 LOC123449913 LOC107922026 LOC107930493 LOC125594719 LOC125577358 CHLRE_12g555951v5 LOC8077992 LOC102589820 LOC102620969 LOC127901238 LOC100846374 LOC107809803 LOC107827881
Function* Cytidine/deoxycytidylate deaminase family protein riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein ribD riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic-like riboflavin biosynthesis protein PYRD, chloroplastic-like uncharacterized protein riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic-like riboflavin biosynthesis protein PYRD, chloroplastic riboflavin biosynthesis protein PYRD, chloroplastic-like riboflavin biosynthesis protein PYRD, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00740 Riboflavin metabolism 4
gma04142 Lysosome 3
gma04626 Plant-pathogen interaction 2
gma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 2
osa01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 6
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 4
vvi04141 Protein processing in endoplasmic reticulum 2
vvi03018 RNA degradation 2
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 3
ppo01240 Biosynthesis of cofactors 2
ppo03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00740 Riboflavin metabolism 4
mtr01240 Biosynthesis of cofactors 4
mtr04142 Lysosome 2
mtr00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 5
tae00740 Riboflavin metabolism 3
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 2
tae00740 Riboflavin metabolism 2
tae00750 Vitamin B6 metabolism 2
tae03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00740 Riboflavin metabolism 2
ghi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00740 Riboflavin metabolism 3
bna01240 Biosynthesis of cofactors 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00740 Riboflavin metabolism 3
bna01240 Biosynthesis of cofactors 3
bna03008 Ribosome biogenesis in eukaryotes 2
bna00240 Pyrimidine metabolism 2
bna01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01240 Biosynthesis of cofactors 5
sbi00860 Porphyrin metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 10
cit00620 Pyruvate metabolism 8
cit01240 Biosynthesis of cofactors 7
cit00010 Glycolysis / Gluconeogenesis 6
cit00020 Citrate cycle (TCA cycle) 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit01200 Carbon metabolism 10
cit00620 Pyruvate metabolism 8
cit01240 Biosynthesis of cofactors 7
cit00010 Glycolysis / Gluconeogenesis 6
cit00020 Citrate cycle (TCA cycle) 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi00500 Starch and sucrose metabolism 2
bdi01240 Biosynthesis of cofactors 2
bdi00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00740 Riboflavin metabolism 4
nta01240 Biosynthesis of cofactors 4
nta00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01240 Biosynthesis of cofactors 5
nta00740 Riboflavin metabolism 4
nta00630 Glyoxylate and dicarboxylate metabolism 2
nta00650 Butanoate metabolism 2
nta01200 Carbon metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827843 100789675 100786393 101263546 9272088 4331409 100191772 103834212 100246468 7461764 11422868 123093822 123099050 123449913 107922026 107930493 125594719 125577358 5719743 8077992 102589820 102620969 127901238 100846374 107809803 107827881
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