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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7497640   3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 
 ppo-r.4   7497640   3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 
 ppo-m.4   7497640   3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 
 gma-u.5   100815230   3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 
 gma-u.5   100813160   3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 
 mtr-u.5   11410121   3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 
 ath-u.5   AT3G24360   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 ath-u.5   AT4G13360   ATP-dependent caseinolytic (Clp) protease/crotonase family protein 
 vvi-u.5   100261210   3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 
 sly-u.5   101258741   3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial 
 sly-u.5   101267525   3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 
 osa-u.5   4341424   3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 
 zma-u.5   100272777   uncharacterized LOC100272777 

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Top 50 coexpressed genes to 7497640 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7497640 (ppo-u.5 coexpression data)

CoexMap"7497640"


ppoLOC7497640 | Entrez gene ID : 7497640    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 3 2 1 2 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop00280 [list] [network] Valine, leucine and isoleucine degradation (65 genes)
pop00410 [list] [network] beta-Alanine metabolism (70 genes)
pop00640 [list] [network] Propanoate metabolism (59 genes)
pop01200 [list] [network] Carbon metabolism (347 genes)
GO BP
GO:0006574 [list] [network] L-valine catabolic process  (19 genes)  IEA  
GO CC
GO:0005829 [list] [network] cytosol  (1141 genes)  IEA  
GO MF
GO:0003860 [list] [network] 3-hydroxyisobutyryl-CoA hydrolase activity  (11 genes)  IEA  
Protein XP_002308317.4 [sequence] [blastp]
XP_024460470.2 [sequence] [blastp]
XP_024460471.2 [sequence] [blastp]
XP_052310200.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for XP_002308317.4)
cyto 5,  chlo 3,  nucl 1,  chlo_mito 1  (predict for XP_024460470.2)
nucl 7,  chlo 2  (predict for XP_024460471.2)
cyto 4,  chlo 3,  cyto_nucl 3  (predict for XP_052310200.1)
Subcellular
localization
TargetP
other 8  (predict for XP_002308317.4)
other 7  (predict for XP_024460470.2)
mito 4,  other 3  (predict for XP_024460471.2)
other 7  (predict for XP_052310200.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7497640

.
ppo-r.4
for
7497640

.
ppo-m.4
for
7497640

.
gma-u.5
for
100815230

.
gma-u.5
for
100813160

.
mtr-u.5
for
11410121

.
ath-u.5
for
AT3G24360

.
ath-u.5
for
AT4G13360

.
vvi-u.5
for
100261210

.
sly-u.5
for
101258741

.
sly-u.5
for
101267525

.
osa-u.5
for
4341424

.
zma-u.5
for
100272777

.


Ortholog ID: 6274
Species ath ath gma gma sly sly osa zma bra bra vvi ppo mtr tae tae hvu ghi ghi bna bna sbi sot sot cit bdi nta nta
Symbol AT3G24360 AT4G13360 LOC100813160 LOC100815230 LOC101267525 LOC101258741 LOC4341424 LOC100272777 LOC103860033 LOC103863634 LOC100261210 LOC7497640 LOC11410121 LOC123167514 LOC123148114 LOC123407481 LOC107893306 LOC107933011 LOC111197809 LOC106427000 LOC110431231 LOC102579872 LOC102594263 LOC102625612 LOC100823548 LOC107809419 LOC107782325
Function* ATP-dependent caseinolytic (Clp) protease/crotonase family protein ATP-dependent caseinolytic (Clp) protease/crotonase family protein 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial uncharacterized LOC100272777 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 4, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial 3-hydroxyisobutyryl-CoA hydrolase-like protein 3, mitochondrial
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04075 Plant hormone signal transduction 4
ath00280 Valine, leucine and isoleucine degradation 3
ath01230 Biosynthesis of amino acids 3
ath00640 Propanoate metabolism 2
ath00220 Arginine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00480 Glutathione metabolism 4
ath01200 Carbon metabolism 4
ath00020 Citrate cycle (TCA cycle) 3
ath00620 Pyruvate metabolism 2
ath01210 2-Oxocarboxylic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 5
gma01230 Biosynthesis of amino acids 3
gma00190 Oxidative phosphorylation 2
gma00270 Cysteine and methionine metabolism 2
gma00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01200 Carbon metabolism 5
gma00270 Cysteine and methionine metabolism 2
gma01230 Biosynthesis of amino acids 2
gma00280 Valine, leucine and isoleucine degradation 2
gma00410 beta-Alanine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03015 mRNA surveillance pathway 3
sly03010 Ribosome 2
sly00280 Valine, leucine and isoleucine degradation 2
sly00410 beta-Alanine metabolism 2
sly00640 Propanoate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly00280 Valine, leucine and isoleucine degradation 2
sly00410 beta-Alanine metabolism 2
sly00640 Propanoate metabolism 2
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 4
osa01240 Biosynthesis of cofactors 3
osa00270 Cysteine and methionine metabolism 2
osa00920 Sulfur metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00280 Valine, leucine and isoleucine degradation 2
zma00410 beta-Alanine metabolism 2
zma00640 Propanoate metabolism 2
zma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00280 Valine, leucine and isoleucine degradation 2
bra00410 beta-Alanine metabolism 2
bra00640 Propanoate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03050 Proteasome 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00480 Glutathione metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00410 beta-Alanine metabolism 6
mtr00240 Pyrimidine metabolism 3
mtr00770 Pantothenate and CoA biosynthesis 3
mtr01200 Carbon metabolism 3
mtr00071 Fatty acid degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00330 Arginine and proline metabolism 3
tae00280 Valine, leucine and isoleucine degradation 3
tae00410 beta-Alanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 4
tae00480 Glutathione metabolism 3
tae00280 Valine, leucine and isoleucine degradation 3
tae00410 beta-Alanine metabolism 3
tae00640 Propanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01200 Carbon metabolism 3
hvu00030 Pentose phosphate pathway 2
hvu01230 Biosynthesis of amino acids 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 10
ghi00010 Glycolysis / Gluconeogenesis 4
ghi00051 Fructose and mannose metabolism 4
ghi00562 Inositol phosphate metabolism 4
ghi00710 Carbon fixation by Calvin cycle 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01200 Carbon metabolism 10
ghi00280 Valine, leucine and isoleucine degradation 6
ghi00640 Propanoate metabolism 6
ghi01240 Biosynthesis of cofactors 6
ghi00020 Citrate cycle (TCA cycle) 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00760 Nicotinate and nicotinamide metabolism 4
bna01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00280 Valine, leucine and isoleucine degradation 3
bna00410 beta-Alanine metabolism 3
bna00640 Propanoate metabolism 3
bna01200 Carbon metabolism 3
bna04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
sbi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00280 Valine, leucine and isoleucine degradation 2
sot04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 6
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00500 Starch and sucrose metabolism 2
cit04814 Motor proteins 2
cit01200 Carbon metabolism 2
cit00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04145 Phagosome 8
bdi04144 Endocytosis 4
bdi04148 Efferocytosis 4
bdi00190 Oxidative phosphorylation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 7
nta00020 Citrate cycle (TCA cycle) 5
nta00640 Propanoate metabolism 5
nta00190 Oxidative phosphorylation 5
nta00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 5
nta00190 Oxidative phosphorylation 4
nta00640 Propanoate metabolism 3
nta00020 Citrate cycle (TCA cycle) 3
nta00280 Valine, leucine and isoleucine degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 822025 826967 100813160 100815230 101267525 101258741 4341424 100272777 103860033 103863634 100261210 7497640 11410121 123167514 123148114 123407481 107893306 107933011 111197809 106427000 110431231 102579872 102594263 102625612 100823548 107809419 107782325
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