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Orthologous genes in OrthoFinder**

Species Gene Description
 sly-u.5   GGPS1   geranylgeranyl pyrophosphate synthase 1 
 sly-r.6   GGPS1   geranylgeranyl pyrophosphate synthase 1 
 sly-u.5   100037490   geranylgeranyl pyrophosphate synthetase-like protein 
 sly-u.5   GGPS2   geranylgeranyl pyrophosphate synthase 2 
 sot-r.1   102580697   geranylgeranyl pyrophosphate synthase, chloroplastic-like 
 sot-r.1   102587251   geranylgeranyl pyrophosphate synthase 7, chloroplastic-like 
 sot-r.1   102589012   geranylgeranyl pyrophosphate synthase, chloroplastic-like 
 nta-r.1   107774226   geranylgeranyl pyrophosphate synthase, chloroplastic-like 
 nta-r.1   107799556   geranylgeranyl pyrophosphate synthase, chloroplastic-like 
 nta-r.1   107822513   geranylgeranyl pyrophosphate synthase 7, chloroplastic-like 
 ath-u.5   GGPS6   geranylgeranyl pyrophosphate synthase 6 
 gma-u.5   100785539   geranylgeranyl pyrophosphate synthase, chloroplastic 
 gma-u.5   100782362   geranylgeranyl pyrophosphate synthase, chloroplastic 
 gma-u.5   100778289   geranylgeranyl pyrophosphate synthase, chloroplastic 
 bra-r.6   103835005   heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic 
 bra-r.6   103839973   geranylgeranyl pyrophosphate synthase 7, chloroplastic 
 vvi-u.5   100257359   geranylgeranyl pyrophosphate synthase, chloroplastic 
 vvi-u.5   100266842   geranylgeranyl pyrophosphate synthase, chloroplastic 
 vvi-u.5   100259617   heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic 
 ppo-u.5   18099318   geranylgeranyl pyrophosphate synthase, chloroplastic 
 mtr-u.5   11407094   geranylgeranyl pyrophosphate synthase 7, chloroplastic 
 mtr-u.5   11406646   geranylgeranyl pyrophosphate synthase, chloroplastic 
 ghi-r.1   107897524   geranylgeranyl pyrophosphate synthase, chloroplastic 
 ghi-r.1   107912003   geranylgeranyl pyrophosphate synthase, chloroplastic 
 bna-r.1   106425731   geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic 
 bna-r.1   106361432   heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic-like 
 cit-r.1   102628549   geranylgeranyl pyrophosphate synthase 7, chloroplastic-like 
 cit-r.1   102628942   geranylgeranyl pyrophosphate synthase, chloroplastic 
 osa-u.5   4343721   geranylgeranyl pyrophosphate synthase 7, chloroplastic 
 osa-u.5   9272383   geranylgeranyl pyrophosphate synthase 7, chloroplastic 
 zma-u.5   100502523   putative geranylgeranyl pyrophosphate synthase 1 
 zma-u.5   100502524   putative geranylgeranyl pyrophosphate synthase 3 
 zma-u.5   100502545   uncharacterized LOC100502545 
 tae-r.2   123052295   geranylgeranyl pyrophosphate synthase, chloroplastic 
 tae-r.2   123044435   geranylgeranyl pyrophosphate synthase, chloroplastic 
 hvu-r.1   123404206   geranylgeranyl pyrophosphate synthase 7, chloroplastic-like 
 hvu-r.1   123429802   geranylgeranyl pyrophosphate synthase, chloroplastic-like 
 sbi-r.1   8085070   geranylgeranyl pyrophosphate synthase 7, chloroplastic 
 sbi-r.1   8058355   geranylgeranyl pyrophosphate synthase, chloroplastic 
 bdi-r.1   100841309   geranylgeranyl pyrophosphate synthase, chloroplastic 
 bdi-r.1   100830402   geranylgeranyl pyrophosphate synthase 7, chloroplastic 
 cre-r.1   CHLRE_12g484200v5   uncharacterized protein 

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Top 50 coexpressed genes to GGPS1 (sly-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to GGPS1 (sly-u.5 coexpression data)

CoexMap"778310"


slyGGPS1 | Entrez gene ID : 778310      
Species sly sot nta ath gma bra vvi ppo mtr ghi bna cit osa zma tae hvu sbi bdi cre
Paralog 4 3 3 1 3 2 3 1 2 2 2 2 2 3 2 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sly00900 [list] [network] Terpenoid backbone biosynthesis (57 genes)
GO BP
GO:0008299 [list] [network] isoprenoid biosynthetic process  (124 genes)  IEA  
GO CC
GO MF
GO:0004659 [list] [network] prenyltransferase activity  (40 genes)  IEA  
Protein NP_001234087.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  cyto 3,  chlo_mito 3  (predict for NP_001234087.1)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001234087.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sly-u.5
for
GGPS1
sly-r.6
for
GGPS1
sly-u.5
for
100037490
sly-u.5
for
GGPS2
sot-r.1
for
102580697
sot-r.1
for
102587251
sot-r.1
for
102589012
nta-r.1
for
107774226
nta-r.1
for
107799556
nta-r.1
for
107822513
ath-u.5
for
GGPS6
gma-u.5
for
100785539
gma-u.5
for
100782362
gma-u.5
for
100778289
bra-r.6
for
103835005
bra-r.6
for
103839973
vvi-u.5
for
100257359
vvi-u.5
for
100266842
vvi-u.5
for
100259617
ppo-u.5
for
18099318
mtr-u.5
for
11407094
mtr-u.5
for
11406646
ghi-r.1
for
107897524
ghi-r.1
for
107912003
bna-r.1
for
106425731
bna-r.1
for
106361432
cit-r.1
for
102628549
cit-r.1
for
102628942
osa-u.5
for
4343721
osa-u.5
for
9272383
zma-u.5
for
100502523
zma-u.5
for
100502524
zma-u.5
for
100502545
tae-r.2
for
123052295
tae-r.2
for
123044435
hvu-r.1
for
123404206
hvu-r.1
for
123429802
sbi-r.1
for
8085070
sbi-r.1
for
8058355
bdi-r.1
for
100841309
bdi-r.1
for
100830402
cre-r.1
for
CHLRE_12g484200v5


Ortholog ID: 1096
Species sly sly sly sot sot sot nta nta nta ath gma gma gma bra vvi vvi vvi ppo mtr mtr ghi ghi ghi bna cit cit osa osa zma zma zma tae hvu hvu sbi sbi bdi bdi cre
Symbol GGPS1 LOC100037490 GGPS2 LOC102580697 LOC102587251 LOC102589012 LOC107774226 LOC107799556 LOC107767573 AT3G20160 LOC100785539 LOC100782362 LOC100778289 LOC103865611 LOC100257359 LOC100266842 LOC100259617 LOC18099318 LOC11407094 LOC11406646 LOC121222400 LOC121222401 LOC121222402 LOC106384672 LOC102628549 LOC102628942 LOC4343721 LOC9272383 LOC100502523 LOC100502524 LOC100502545 LOC123052295 LOC123404206 LOC123429802 LOC8085070 LOC8058355 LOC100841309 LOC100830402 CHLRE_12g484200v5
Function* geranylgeranyl pyrophosphate synthase 1 geranylgeranyl pyrophosphate synthetase-like protein geranylgeranyl pyrophosphate synthase 2 geranylgeranyl pyrophosphate synthase, chloroplastic-like geranylgeranyl pyrophosphate synthase 7, chloroplastic-like geranylgeranyl pyrophosphate synthase, chloroplastic-like geranylgeranyl pyrophosphate synthase, chloroplastic-like geranylgeranyl pyrophosphate synthase, chloroplastic-like geranylgeranyl pyrophosphate synthase, chloroplastic Terpenoid synthases superfamily protein geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic/chromoplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase 7, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic heterodimeric geranylgeranyl pyrophosphate synthase large subunit 1, chloroplastic geranylgeranyl pyrophosphate synthase 7, chloroplastic-like geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase 7, chloroplastic geranylgeranyl pyrophosphate synthase 7, chloroplastic putative geranylgeranyl pyrophosphate synthase 1 putative geranylgeranyl pyrophosphate synthase 3 uncharacterized LOC100502545 geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase 7, chloroplastic-like geranylgeranyl pyrophosphate synthase, chloroplastic-like geranylgeranyl pyrophosphate synthase 7, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase, chloroplastic geranylgeranyl pyrophosphate synthase 7, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01230 Biosynthesis of amino acids 5
sly00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
sly04141 Protein processing in endoplasmic reticulum 3
sly01200 Carbon metabolism 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly00900 Terpenoid backbone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00900 Terpenoid backbone biosynthesis 4
sly00010 Glycolysis / Gluconeogenesis 2
sly00020 Citrate cycle (TCA cycle) 2
sly00620 Pyruvate metabolism 2
sly00785 Lipoic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04141 Protein processing in endoplasmic reticulum 3
sot00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 2
nta00960 Tropane, piperidine and pyridine alkaloid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 11
nta00220 Arginine biosynthesis 2
nta01210 2-Oxocarboxylic acid metabolism 2
nta01230 Biosynthesis of amino acids 2
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00900 Terpenoid backbone biosynthesis 9
nta00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00900 Terpenoid backbone biosynthesis 3
ath00380 Tryptophan metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00900 Terpenoid backbone biosynthesis 2
gma00270 Cysteine and methionine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma01230 Biosynthesis of amino acids 4
gma00900 Terpenoid backbone biosynthesis 2
gma00030 Pentose phosphate pathway 2
gma00710 Carbon fixation by Calvin cycle 2
gma01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04141 Protein processing in endoplasmic reticulum 3
gma03018 RNA degradation 3
gma01240 Biosynthesis of cofactors 3
gma03040 Spliceosome 2
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra01230 Biosynthesis of amino acids 5
bra00030 Pentose phosphate pathway 3
bra00710 Carbon fixation by Calvin cycle 3
bra01200 Carbon metabolism 3
bra04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 12
vvi00710 Carbon fixation by Calvin cycle 3
vvi01200 Carbon metabolism 3
vvi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo01200 Carbon metabolism 4
ppo00710 Carbon fixation by Calvin cycle 3
ppo01230 Biosynthesis of amino acids 3
ppo03010 Ribosome 2
ppo00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00906 Carotenoid biosynthesis 8
mtr00900 Terpenoid backbone biosynthesis 4
mtr00730 Thiamine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr01200 Carbon metabolism 4
mtr03010 Ribosome 3
mtr01230 Biosynthesis of amino acids 3
mtr01240 Biosynthesis of cofactors 2
mtr00030 Pentose phosphate pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit00960 Tropane, piperidine and pyridine alkaloid biosynthesis 4
cit00909 Sesquiterpenoid and triterpenoid biosynthesis 3
cit01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00900 Terpenoid backbone biosynthesis 8
osa00904 Diterpenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00999 Biosynthesis of various plant secondary metabolites 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma01240 Biosynthesis of cofactors 5
zma00860 Porphyrin metabolism 4
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 5
zma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00909 Sesquiterpenoid and triterpenoid biosynthesis 3
zma00860 Porphyrin metabolism 3
zma01240 Biosynthesis of cofactors 3
zma00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00860 Porphyrin metabolism 6
tae01240 Biosynthesis of cofactors 6
tae00900 Terpenoid backbone biosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00941 Flavonoid biosynthesis 4
hvu04712 Circadian rhythm - plant 4
hvu04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu01230 Biosynthesis of amino acids 4
hvu00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
hvu00900 Terpenoid backbone biosynthesis 2
hvu01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00591 Linoleic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00860 Porphyrin metabolism 10
cre01240 Biosynthesis of cofactors 6
cre00900 Terpenoid backbone biosynthesis 2
cre00906 Carotenoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 778310 100037490 778360 102580697 102587251 102589012 107774226 107799556 107767573 821560 100785539 100782362 100778289 103865611 100257359 100266842 100259617 18099318 11407094 11406646 121222400 121222401 121222402 106384672 102628549 102628942 4343721 9272383 100502523 100502524 100502545 123052295 123404206 123429802 8085070 8058355 100841309 100830402 5728730
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