ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
tae-r.2	780626	histone deacetylase HDT2
tae-r.2	123161746	histone deacetylase HDT2-like
tae-r.2	123050863	histone deacetylase HDT2
hvu-r.1	123452961	histone deacetylase HDT2-like
bdi-r.1	100835633	histone deacetylase HDT2
bdi-r.1	100837781	histone deacetylase HDT2
osa-u.5	4339823	histone deacetylase HDT2
zma-u.5	541932	uncharacterized LOC541932
zma-u.5	103636709	histone deacetylase HDT1-like
zma-u.5	103636374	histone deacetylase HDT1-like
sbi-r.1	8068982	histone deacetylase HDT2
sbi-r.1	8078710	histone deacetylase HDT3
sbi-r.1	8066575	histone deacetylase HDT2
ath-u.5	HD2B	histone deacetylase 2B
ath-u.5	HD2C	histone deacetylase 2C
ath-u.5	HDA3	histone deacetylase 3
gma-u.5	HD2A	histone deacetylase HDT1
gma-u.5	HDT6	histone deacetylase HDT1-like
gma-u.5	100792094	uncharacterized LOC100792094
sly-u.5	101262270	histone deacetylase HDT1
sly-u.5	101244607	histone deacetylase HDT1
bra-r.6	103845525	histone deacetylase HDT2
bra-r.6	103847362	histone deacetylase HDT3
vvi-u.5	100256817	histone deacetylase HDT1
vvi-u.5	100252840	histone deacetylase HDT1
ppo-u.5	7474933	histone deacetylase HDT1
ppo-u.5	18097993	histone deacetylase HDT1
ppo-u.5	18100075	histone deacetylase HDT1
mtr-u.5	11434564	histone deacetylase HDT1
mtr-u.5	25487509	histone deacetylase HDT1
mtr-u.5	112416804	histone deacetylase HDT1
ghi-r.1	107891646	histone deacetylase HDT1
ghi-r.1	107905356	histone deacetylase HDT3
ghi-r.1	107906652	histone deacetylase HDT1
bna-r.1	106443312	histone deacetylase HDT2-like
bna-r.1	125583208	histone deacetylase HDT2-like
bna-r.1	106433856	histone deacetylase HDT3-like
sot-r.1	102595604	histone deacetylase HDT1
sot-r.1	102595265	histone deacetylase HDT1
cit-r.1	102615049	histone deacetylase HDT1
cit-r.1	102618548	histone deacetylase HDT1-like
nta-r.1	107776644	histone deacetylase HDT1-like
nta-r.1	107782996	histone deacetylase HDT1-like
nta-r.1	107792079	histone deacetylase HDT1-like

Top 50 coexpressed genes to 780626 (tae-r.2 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 780626 (tae-r.2 coexpression data)

CoexMap"780626"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

XP_044425964.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, chlo 4

(predict for XP_044425964.1)

Subcellular
localization
TargetP

chlo 7, mito 6

(predict for XP_044425964.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	tae-r.2 for 780626	tae-r.2 for 123161746	tae-r.2 for 123050863	hvu-r.1 for 123452961	bdi-r.1 for 100835633	bdi-r.1 for 100837781	osa-u.5 for 4339823	zma-u.5 for 541932	zma-u.5 for 103636709	zma-u.5 for 103636374	sbi-r.1 for 8068982	sbi-r.1 for 8078710	sbi-r.1 for 8066575	ath-u.5 for HD2B	ath-u.5 for HD2C	ath-u.5 for HDA3	gma-u.5 for HD2A	gma-u.5 for HDT6	gma-u.5 for 100792094	sly-u.5 for 101262270	sly-u.5 for 101244607	bra-r.6 for 103845525	bra-r.6 for 103847362	vvi-u.5 for 100256817	vvi-u.5 for 100252840	ppo-u.5 for 7474933	ppo-u.5 for 18097993	ppo-u.5 for 18100075	mtr-u.5 for 11434564	mtr-u.5 for 25487509	mtr-u.5 for 112416804	ghi-r.1 for 107891646	ghi-r.1 for 107905356	ghi-r.1 for 107906652	bna-r.1 for 106443312	bna-r.1 for 125583208	bna-r.1 for 106433856	sot-r.1 for 102595604	sot-r.1 for 102595265	cit-r.1 for 102615049	cit-r.1 for 102618548	nta-r.1 for 107776644	nta-r.1 for 107782996	nta-r.1 for 107792079

Ortholog

Ortholog ID: 1463

Species

tae

hvu

bdi

osa

zma

sbi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

HD2B

HD2C

HDA3

HD2A

HDT4

Function^*

histone deacetylase HDT2

histone deacetylase HDT2-like

histone deacetylase HDT2

histone deacetylase HDT1-like

histone deacetylase HDT3-like

histone deacetylase103

histone deacetylase HDT2

histone deacetylase HDT3

histone deacetylase HDT2

histone deacetylase 2B

histone deacetylase 2C

histone deacetylase 3

histone deacetylase HDT1

uncharacterized LOC100792094

histone deacetylase HDT1-like

histone deacetylase HDT1

histone deacetylase HDT2

histone deacetylase HDT1

histone deacetylase HDT3

histone deacetylase HDT1

histone deacetylase HDT2-like

histone deacetylase HDT3

histone deacetylase HDT1

histone deacetylase HDT1-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	8
tae03010	Ribosome	7
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2
tae03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	3
tae03013	Nucleocytoplasmic transport	2
tae03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	2
bdi03030	DNA replication	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	6
osa03010	Ribosome	5
osa00270	Cysteine and methionine metabolism	2
osa00450	Selenocompound metabolism	2
osa01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03013	Nucleocytoplasmic transport	2
sbi03015	mRNA surveillance pathway	2
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	6
sbi03018	RNA degradation	2
sbi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4
sbi03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	8
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	5
ath04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	6
ath03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma03008	Ribosome biogenesis in eukaryotes	2
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03018	RNA degradation	2
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	5
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	8
sly03010	Ribosome	2
sly03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	6
bra03040	Spliceosome	2
bra03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03050	Proteasome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	17
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03020	RNA polymerase	3
ppo03420	Nucleotide excision repair	3
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	7
mtr03018	RNA degradation	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	10
mtr00270	Cysteine and methionine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	4
ghi03420	Nucleotide excision repair	4
ghi03040	Spliceosome	2
ghi04075	Plant hormone signal transduction	2
ghi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	2
ghi00240	Pyrimidine metabolism	2
ghi00250	Alanine, aspartate and glutamate metabolism	2
ghi01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00904	Diterpenoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	2
bna00540	Lipopolysaccharide biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5

Expression

Expression pattern

Entrez Gene ID^*

780626

123050863

123183440

123452961

100835633

100837781

4339823

103636374

103636373

542355

8068982

8078710

8066575

832328

831733

823605

547649

100792094

100795506

101262270

101244607

103845525

103856522

100256817

100252840

7474933

18097993

18100075

11434564

112416804

11434112

107905356

107912781

107955725

106443312

106372652

102595604

102595265

102615049

102618548

107776644

107782996

107798125

The preparation time of this page was 0.2 [sec].


Species	tae	hvu	bdi	osa	zma	sbi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	3	1	2	1	3	3	3	3	2	2	2	3	3	3	3	2	2	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 780626 (tae-r.2 coexpression data)

Top 50 enrichment test to 780626 (tae-r.2 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**